Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01193

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01192 and H281DRAFT_01193 overlap by 19 nucleotidesH281DRAFT_01193 and H281DRAFT_01194 are separated by 286 nucleotides H281DRAFT_01192: H281DRAFT_01192 - Glycine/D-amino acid oxidase (deaminating), at 28,234 to 29,415 _01192 H281DRAFT_01193: H281DRAFT_01193 - 4-hydroxyproline epimerase, at 29,397 to 30,368 _01193 H281DRAFT_01194: H281DRAFT_01194 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 30,655 to 31,806 _01194 Position (kb) 29 30 31Strain fitness (log2 ratio) -1 0 1at 28.949 kb on + strand, within H281DRAFT_01192at 30.042 kb on + strand, within H281DRAFT_01193at 30.043 kb on - strand, within H281DRAFT_01193at 30.161 kb on + strand, within H281DRAFT_01193at 30.380 kb on + strandat 30.707 kb on + strandat 30.707 kb on + strandat 30.708 kb on - strandat 30.708 kb on - strandat 30.765 kb on + strandat 30.875 kb on + strand, within H281DRAFT_01194at 30.917 kb on + strand, within H281DRAFT_01194at 31.119 kb on - strandat 31.119 kb on - strand, within H281DRAFT_01194at 31.194 kb on - strand, within H281DRAFT_01194at 31.194 kb on - strand, within H281DRAFT_01194

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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28,949 + H281DRAFT_01192 0.60 -1.0
30,042 + H281DRAFT_01193 0.66 -0.0
30,043 - H281DRAFT_01193 0.66 +1.0
30,161 + H281DRAFT_01193 0.79 -0.8
30,380 + +0.1
30,707 + +0.1
30,707 + -0.7
30,708 - -0.8
30,708 - -0.0
30,765 + -0.1
30,875 + H281DRAFT_01194 0.19 +0.5
30,917 + H281DRAFT_01194 0.23 -0.4
31,119 - +1.0
31,119 - H281DRAFT_01194 0.40 +0.9
31,194 - H281DRAFT_01194 0.47 -0.5
31,194 - H281DRAFT_01194 0.47 +0.5

Or see this region's nucleotide sequence