Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01060

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01059 and H281DRAFT_01060 are separated by 199 nucleotidesH281DRAFT_01060 and H281DRAFT_01061 overlap by 4 nucleotidesH281DRAFT_01061 and H281DRAFT_01062 are separated by 125 nucleotides H281DRAFT_01059: H281DRAFT_01059 - Predicted transcriptional regulators, at 1,189,705 to 1,190,628 _01059 H281DRAFT_01060: H281DRAFT_01060 - KUP system potassium uptake protein, at 1,190,828 to 1,192,705 _01060 H281DRAFT_01061: H281DRAFT_01061 - hypothetical protein, at 1,192,702 to 1,192,875 _01061 H281DRAFT_01062: H281DRAFT_01062 - hypothetical protein, at 1,193,001 to 1,193,606 _01062 Position (kb) 1190 1191 1192 1193Strain fitness (log2 ratio) -1 0 1at 1189.868 kb on - strandat 1189.926 kb on - strand, within H281DRAFT_01059at 1189.926 kb on - strand, within H281DRAFT_01059at 1189.926 kb on - strand, within H281DRAFT_01059at 1189.929 kb on + strand, within H281DRAFT_01059at 1189.929 kb on + strand, within H281DRAFT_01059at 1190.125 kb on - strand, within H281DRAFT_01059at 1190.267 kb on - strand, within H281DRAFT_01059at 1190.291 kb on + strand, within H281DRAFT_01059at 1190.623 kb on + strandat 1190.623 kb on + strandat 1191.054 kb on - strand, within H281DRAFT_01060at 1191.081 kb on + strand, within H281DRAFT_01060at 1191.205 kb on + strand, within H281DRAFT_01060at 1191.921 kb on + strand, within H281DRAFT_01060at 1191.922 kb on - strand, within H281DRAFT_01060at 1192.135 kb on + strand, within H281DRAFT_01060at 1192.138 kb on + strand, within H281DRAFT_01060at 1192.163 kb on - strand, within H281DRAFT_01060at 1192.234 kb on - strand, within H281DRAFT_01060at 1192.272 kb on + strand, within H281DRAFT_01060at 1192.399 kb on - strand, within H281DRAFT_01060at 1192.401 kb on + strand, within H281DRAFT_01060at 1192.402 kb on - strand, within H281DRAFT_01060at 1192.521 kb on - strandat 1192.524 kb on - strandat 1192.598 kb on + strandat 1192.614 kb on + strandat 1192.641 kb on + strandat 1192.738 kb on + strand, within H281DRAFT_01061at 1192.810 kb on + strand, within H281DRAFT_01061at 1192.811 kb on - strand, within H281DRAFT_01061at 1192.860 kb on + strandat 1192.860 kb on + strandat 1192.999 kb on + strandat 1192.999 kb on + strandat 1193.094 kb on - strand, within H281DRAFT_01062at 1193.312 kb on + strand, within H281DRAFT_01062at 1193.379 kb on + strand, within H281DRAFT_01062at 1193.466 kb on + strand, within H281DRAFT_01062at 1193.536 kb on - strand, within H281DRAFT_01062at 1193.596 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,189,868 - +0.4
1,189,926 - H281DRAFT_01059 0.24 -0.6
1,189,926 - H281DRAFT_01059 0.24 +1.4
1,189,926 - H281DRAFT_01059 0.24 -0.4
1,189,929 + H281DRAFT_01059 0.24 +0.3
1,189,929 + H281DRAFT_01059 0.24 +0.3
1,190,125 - H281DRAFT_01059 0.45 +0.2
1,190,267 - H281DRAFT_01059 0.61 +0.9
1,190,291 + H281DRAFT_01059 0.63 +0.4
1,190,623 + +0.1
1,190,623 + +1.4
1,191,054 - H281DRAFT_01060 0.12 -1.5
1,191,081 + H281DRAFT_01060 0.13 +0.3
1,191,205 + H281DRAFT_01060 0.20 -0.4
1,191,921 + H281DRAFT_01060 0.58 -0.2
1,191,922 - H281DRAFT_01060 0.58 -0.5
1,192,135 + H281DRAFT_01060 0.70 -1.4
1,192,138 + H281DRAFT_01060 0.70 -0.4
1,192,163 - H281DRAFT_01060 0.71 -0.2
1,192,234 - H281DRAFT_01060 0.75 +0.2
1,192,272 + H281DRAFT_01060 0.77 -0.2
1,192,399 - H281DRAFT_01060 0.84 -1.1
1,192,401 + H281DRAFT_01060 0.84 +0.2
1,192,402 - H281DRAFT_01060 0.84 -0.2
1,192,521 - +0.7
1,192,524 - +0.3
1,192,598 + -1.3
1,192,614 + +0.5
1,192,641 + +0.2
1,192,738 + H281DRAFT_01061 0.21 +0.4
1,192,810 + H281DRAFT_01061 0.62 +0.2
1,192,811 - H281DRAFT_01061 0.63 +0.9
1,192,860 + +0.0
1,192,860 + +0.2
1,192,999 + -0.7
1,192,999 + -0.1
1,193,094 - H281DRAFT_01062 0.15 -0.4
1,193,312 + H281DRAFT_01062 0.51 -1.3
1,193,379 + H281DRAFT_01062 0.62 +0.4
1,193,466 + H281DRAFT_01062 0.77 -0.9
1,193,536 - H281DRAFT_01062 0.88 -1.2
1,193,596 + +0.1

Or see this region's nucleotide sequence