Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03703

Experiment: PYE 0.5x 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03702 and CCNA_03703 are separated by 148 nucleotidesCCNA_03703 and CCNA_03704 are separated by 114 nucleotides CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400 _03702 CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190 _03703 CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636 _03704 Position (kb) 3871 3872 3873Strain fitness (log2 ratio) -2 -1 0 1at 3872.191 kb on + strandat 3872.191 kb on + strandat 3872.194 kb on - strandat 3872.199 kb on - strandat 3872.215 kb on + strandat 3872.225 kb on + strandat 3872.226 kb on + strandat 3872.233 kb on - strandat 3872.234 kb on - strandat 3872.240 kb on + strandat 3872.240 kb on + strandat 3872.245 kb on - strandat 3872.253 kb on - strandat 3872.271 kb on + strandat 3872.273 kb on - strandat 3872.278 kb on - strandat 3872.279 kb on - strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep2 58 days
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3,872,191 + +0.5
3,872,191 + -1.3
3,872,194 - +1.1
3,872,199 - -0.2
3,872,215 + -1.5
3,872,225 + -0.2
3,872,226 + -0.9
3,872,233 - +1.2
3,872,234 - -0.1
3,872,240 + -0.8
3,872,240 + -1.7
3,872,245 - +0.2
3,872,253 - +0.4
3,872,271 + -2.1
3,872,273 - +1.2
3,872,278 - +0.1
3,872,279 - -0.4
3,872,303 + -0.8
3,872,303 + +0.9
3,872,303 + -1.2
3,872,303 + -2.1
3,872,311 - +1.1
3,872,311 - +0.4
3,872,311 - +0.6
3,872,311 - +0.6
3,872,311 - +0.3
3,872,311 - -0.2
3,872,333 - +0.6

Or see this region's nucleotide sequence