Experiment: PYE 0.5x 4C survival rep2 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03605 and CCNA_03607 are separated by 166 nucleotides CCNA_03607 and CCNA_03609 are separated by 487 nucleotides
CCNA_03605: CCNA_03605 - hypothetical protein, at 3,759,296 to 3,760,189
_03605
CCNA_03607: CCNA_03607 - ribonucleoside-diphosphate reductase alpha chain, at 3,760,356 to 3,762,239
_03607
CCNA_03609: CCNA_03609 - outer membrane protein, at 3,762,727 to 3,763,932
_03609
Position (kb)
3760
3761
3762
3763 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3759.420 kb on - strand, within CCNA_03605 at 3759.441 kb on + strand, within CCNA_03605 at 3759.506 kb on + strand, within CCNA_03605 at 3759.532 kb on - strand, within CCNA_03605 at 3759.615 kb on - strand, within CCNA_03605 at 3759.631 kb on + strand, within CCNA_03605 at 3759.655 kb on + strand at 3759.666 kb on + strand, within CCNA_03605 at 3759.679 kb on - strand, within CCNA_03605 at 3759.714 kb on - strand, within CCNA_03605 at 3759.752 kb on + strand, within CCNA_03605 at 3759.752 kb on + strand, within CCNA_03605 at 3759.754 kb on - strand, within CCNA_03605 at 3759.802 kb on + strand, within CCNA_03605 at 3759.887 kb on - strand, within CCNA_03605 at 3759.928 kb on - strand, within CCNA_03605 at 3759.933 kb on - strand, within CCNA_03605 at 3759.936 kb on + strand, within CCNA_03605 at 3759.952 kb on - strand, within CCNA_03605 at 3759.993 kb on + strand, within CCNA_03605 at 3760.017 kb on - strand, within CCNA_03605 at 3760.017 kb on - strand, within CCNA_03605 at 3760.074 kb on + strand, within CCNA_03605 at 3760.088 kb on - strand, within CCNA_03605 at 3760.117 kb on + strand at 3760.136 kb on + strand at 3760.157 kb on - strand at 3760.191 kb on + strand at 3760.206 kb on - strand at 3760.212 kb on + strand at 3760.218 kb on + strand at 3760.262 kb on + strand at 3760.300 kb on + strand at 3762.395 kb on - strand at 3762.416 kb on + strand at 3762.514 kb on - strand at 3762.514 kb on - strand at 3762.526 kb on - strand at 3762.526 kb on - strand at 3762.526 kb on - strand at 3762.526 kb on - strand at 3762.526 kb on - strand at 3762.595 kb on - strand at 3762.595 kb on - strand at 3762.606 kb on + strand at 3762.628 kb on - strand at 3762.628 kb on - strand at 3762.709 kb on - strand at 3762.931 kb on - strand, within CCNA_03609
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep2 58 days remove 3,759,420 - CCNA_03605 0.14 -0.9 3,759,441 + CCNA_03605 0.16 +0.0 3,759,506 + CCNA_03605 0.23 +0.6 3,759,532 - CCNA_03605 0.26 -0.7 3,759,615 - CCNA_03605 0.36 +0.4 3,759,631 + CCNA_03605 0.37 -1.0 3,759,655 + -3.7 3,759,666 + CCNA_03605 0.41 -0.3 3,759,679 - CCNA_03605 0.43 -0.1 3,759,714 - CCNA_03605 0.47 +1.0 3,759,752 + CCNA_03605 0.51 +0.2 3,759,752 + CCNA_03605 0.51 -1.8 3,759,754 - CCNA_03605 0.51 +1.9 3,759,802 + CCNA_03605 0.57 +0.5 3,759,887 - CCNA_03605 0.66 +0.0 3,759,928 - CCNA_03605 0.71 +0.5 3,759,933 - CCNA_03605 0.71 +0.5 3,759,936 + CCNA_03605 0.72 -0.8 3,759,952 - CCNA_03605 0.73 +2.8 3,759,993 + CCNA_03605 0.78 -0.6 3,760,017 - CCNA_03605 0.81 +0.5 3,760,017 - CCNA_03605 0.81 +1.4 3,760,074 + CCNA_03605 0.87 +0.2 3,760,088 - CCNA_03605 0.89 +0.5 3,760,117 + -1.3 3,760,136 + +0.8 3,760,157 - +1.0 3,760,191 + -0.9 3,760,206 - +1.2 3,760,212 + +0.3 3,760,218 + -1.0 3,760,262 + +0.4 3,760,300 + +1.2 3,762,395 - +0.4 3,762,416 + -0.5 3,762,514 - +0.2 3,762,514 - +0.4 3,762,526 - -0.3 3,762,526 - +0.7 3,762,526 - +2.0 3,762,526 - +0.1 3,762,526 - +0.1 3,762,595 - -0.7 3,762,595 - +1.6 3,762,606 + +1.3 3,762,628 - -1.3 3,762,628 - +0.5 3,762,709 - -0.1 3,762,931 - CCNA_03609 0.17 -1.8
Or see this region's nucleotide sequence