Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03607

Experiment: PYE 0.5x 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03605 and CCNA_03607 are separated by 166 nucleotidesCCNA_03607 and CCNA_03609 are separated by 487 nucleotides CCNA_03605: CCNA_03605 - hypothetical protein, at 3,759,296 to 3,760,189 _03605 CCNA_03607: CCNA_03607 - ribonucleoside-diphosphate reductase alpha chain, at 3,760,356 to 3,762,239 _03607 CCNA_03609: CCNA_03609 - outer membrane protein, at 3,762,727 to 3,763,932 _03609 Position (kb) 3760 3761 3762 3763Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3759.420 kb on - strand, within CCNA_03605at 3759.441 kb on + strand, within CCNA_03605at 3759.506 kb on + strand, within CCNA_03605at 3759.532 kb on - strand, within CCNA_03605at 3759.615 kb on - strand, within CCNA_03605at 3759.631 kb on + strand, within CCNA_03605at 3759.655 kb on + strandat 3759.666 kb on + strand, within CCNA_03605at 3759.679 kb on - strand, within CCNA_03605at 3759.714 kb on - strand, within CCNA_03605at 3759.752 kb on + strand, within CCNA_03605at 3759.752 kb on + strand, within CCNA_03605at 3759.754 kb on - strand, within CCNA_03605at 3759.802 kb on + strand, within CCNA_03605at 3759.887 kb on - strand, within CCNA_03605at 3759.928 kb on - strand, within CCNA_03605at 3759.933 kb on - strand, within CCNA_03605at 3759.936 kb on + strand, within CCNA_03605at 3759.952 kb on - strand, within CCNA_03605at 3759.993 kb on + strand, within CCNA_03605at 3760.017 kb on - strand, within CCNA_03605at 3760.017 kb on - strand, within CCNA_03605at 3760.074 kb on + strand, within CCNA_03605at 3760.088 kb on - strand, within CCNA_03605at 3760.117 kb on + strandat 3760.136 kb on + strandat 3760.157 kb on - strandat 3760.191 kb on + strandat 3760.206 kb on - strandat 3760.212 kb on + strandat 3760.218 kb on + strandat 3760.262 kb on + strandat 3760.300 kb on + strandat 3762.395 kb on - strandat 3762.416 kb on + strandat 3762.514 kb on - strandat 3762.514 kb on - strandat 3762.526 kb on - strandat 3762.526 kb on - strandat 3762.526 kb on - strandat 3762.526 kb on - strandat 3762.526 kb on - strandat 3762.595 kb on - strandat 3762.595 kb on - strandat 3762.606 kb on + strandat 3762.628 kb on - strandat 3762.628 kb on - strandat 3762.709 kb on - strandat 3762.931 kb on - strand, within CCNA_03609

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep2 58 days
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3,759,420 - CCNA_03605 0.14 -0.9
3,759,441 + CCNA_03605 0.16 +0.0
3,759,506 + CCNA_03605 0.23 +0.6
3,759,532 - CCNA_03605 0.26 -0.7
3,759,615 - CCNA_03605 0.36 +0.4
3,759,631 + CCNA_03605 0.37 -1.0
3,759,655 + -3.7
3,759,666 + CCNA_03605 0.41 -0.3
3,759,679 - CCNA_03605 0.43 -0.1
3,759,714 - CCNA_03605 0.47 +1.0
3,759,752 + CCNA_03605 0.51 +0.2
3,759,752 + CCNA_03605 0.51 -1.8
3,759,754 - CCNA_03605 0.51 +1.9
3,759,802 + CCNA_03605 0.57 +0.5
3,759,887 - CCNA_03605 0.66 +0.0
3,759,928 - CCNA_03605 0.71 +0.5
3,759,933 - CCNA_03605 0.71 +0.5
3,759,936 + CCNA_03605 0.72 -0.8
3,759,952 - CCNA_03605 0.73 +2.8
3,759,993 + CCNA_03605 0.78 -0.6
3,760,017 - CCNA_03605 0.81 +0.5
3,760,017 - CCNA_03605 0.81 +1.4
3,760,074 + CCNA_03605 0.87 +0.2
3,760,088 - CCNA_03605 0.89 +0.5
3,760,117 + -1.3
3,760,136 + +0.8
3,760,157 - +1.0
3,760,191 + -0.9
3,760,206 - +1.2
3,760,212 + +0.3
3,760,218 + -1.0
3,760,262 + +0.4
3,760,300 + +1.2
3,762,395 - +0.4
3,762,416 + -0.5
3,762,514 - +0.2
3,762,514 - +0.4
3,762,526 - -0.3
3,762,526 - +0.7
3,762,526 - +2.0
3,762,526 - +0.1
3,762,526 - +0.1
3,762,595 - -0.7
3,762,595 - +1.6
3,762,606 + +1.3
3,762,628 - -1.3
3,762,628 - +0.5
3,762,709 - -0.1
3,762,931 - CCNA_03609 0.17 -1.8

Or see this region's nucleotide sequence