Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03445

Experiment: PYE 0.5x 4C survival rep2 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep2 58 days
3,607,710	+		CCNA_03444	0.67	+0.7
3,607,716	-		CCNA_03444	0.67	-2.4
3,607,718	-		CCNA_03444	0.67	+0.9
3,607,722	-		CCNA_03444	0.68	+0.7
3,607,731	+		CCNA_03444	0.68	-1.3
3,607,731	+		CCNA_03444	0.68	-0.5
3,607,731	+		CCNA_03444	0.68	-1.4
3,607,731	+		CCNA_03444	0.68	-0.7
3,607,771	-		CCNA_03444	0.70	-2.0
3,607,794	+		CCNA_03444	0.70	-0.3
3,607,818	-		CCNA_03444	0.71	-2.2
3,607,839	-		CCNA_03444	0.72	-2.5
3,607,841	+		CCNA_03444	0.72	+0.2
3,607,848	+		CCNA_03444	0.73	+0.1
3,607,848	+		CCNA_03444	0.73	-2.4
3,607,848	+		CCNA_03444	0.73	+0.3
3,607,874	-		CCNA_03444	0.74	-0.1
3,607,889	+		CCNA_03444	0.74	-0.5
3,607,889	+		CCNA_03444	0.74	-0.6
3,607,889	+		CCNA_03444	0.74	-2.3
3,607,889	+		CCNA_03444	0.74	-2.2
3,607,897	-		CCNA_03444	0.75	-0.3
3,607,907	-		CCNA_03444	0.75	+0.1
3,607,917	-		CCNA_03444	0.75	-2.1
3,607,929	+		CCNA_03444	0.76	-0.0
3,607,936	+		CCNA_03444	0.76	+0.4
3,607,954	-		CCNA_03444	0.77	-2.2
3,608,012	-		CCNA_03444	0.79	-1.6
3,608,020	+		CCNA_03444	0.79	-1.6
3,608,020	+		CCNA_03444	0.79	-1.4
3,608,054	+		CCNA_03444	0.81	+0.3
3,608,062	-		CCNA_03444	0.81	+0.7
3,608,062	-		CCNA_03444	0.81	-1.6
3,608,062	-		CCNA_03444	0.81	-2.1
3,608,063	-		CCNA_03444	0.81	-1.5
3,608,093	+		CCNA_03444	0.82	-1.0
3,608,114	+		CCNA_03444	0.83	+0.6
3,608,122	-		CCNA_03444	0.83	-0.9
3,608,122	-		CCNA_03444	0.83	+0.3
3,608,131	+		CCNA_03444	0.84	+0.2
3,608,177	-		CCNA_03444	0.86	+0.3
3,608,189	-		CCNA_03444	0.86	+1.0
3,608,206	+		CCNA_03444	0.87	+0.6
3,608,207	+		CCNA_03444	0.87	+2.1
3,608,207	-		CCNA_03444	0.87	-0.0
3,608,216	+		CCNA_03444	0.87	+0.8
3,608,242	-		CCNA_03444	0.88	-0.6
3,608,244	-		CCNA_03444	0.88	+0.2
3,608,246	+		CCNA_03444	0.88	+1.8
3,608,246	+		CCNA_03444	0.88	-0.2
3,608,248	+		CCNA_03444	0.89	-0.1
3,608,254	-		CCNA_03444	0.89	-0.5
3,608,254	-		CCNA_03444	0.89	+0.1
3,608,254	-		CCNA_03444	0.89	-0.0
3,608,254	-		CCNA_03444	0.89	-1.2
3,608,259	+		CCNA_03444	0.89	-2.0
3,608,264	+		CCNA_03444	0.89	-0.0
3,608,267	-		CCNA_03444	0.89	-0.2
3,608,281	+		CCNA_03444	0.90	+0.4
3,608,292	+				+0.4
3,608,318	+				-0.3
3,608,318	+				+0.5
3,608,338	+				+0.4
3,608,346	-				-1.3
3,608,360	+				+1.1
3,608,368	-				-0.3
3,608,368	-				-1.4
3,608,404	-				-0.4
3,608,404	-				-1.3
3,608,438	+				+0.1
3,608,441	+				+0.4
3,608,446	-				-2.1
3,608,446	-				+2.3
3,608,446	-				-0.9
3,608,448	+				+0.0
3,608,448	+				+0.7
3,608,448	+				-0.0
3,608,448	+				-1.8
3,608,448	+				+1.3
3,608,448	+				+0.6
3,608,448	+				-0.2
3,608,454	+				+0.4
3,608,456	-				+0.7
3,608,456	-				+0.7
3,608,456	-				-0.9
3,608,456	-				-0.7
3,608,456	-				-1.4
3,608,459	+				-1.7
3,608,464	+				-0.3
3,608,472	-				-2.2
3,608,496	-				+2.3
3,608,519	-				-1.7
3,608,530	+				+0.2
3,608,538	-				-0.7
3,608,538	-				+4.6
3,608,538	-				-2.2
3,608,538	-				-2.0
3,608,625	-				-0.6
3,608,637	-				+0.7
3,608,653	-				+1.0
3,608,747	-				-0.6
3,608,752	+				-0.1
3,608,795	-				-1.5
3,608,839	+				-0.1
3,608,842	-				-1.4
3,608,866	+				+0.6
3,608,868	+				+0.7
3,608,870	+				-0.2
3,608,876	-				-0.7
3,608,924	+				+0.5
3,608,938	+				+0.5
3,608,945	+				+1.3
3,608,946	-				+2.3
3,608,946	-				-3.3
3,608,946	-				-0.5
3,608,973	+		CCNA_03445	0.11	-0.9
3,608,983	+		CCNA_03445	0.11	-0.4
3,608,991	-		CCNA_03445	0.12	+0.4
3,609,015	+		CCNA_03445	0.13	+2.6
3,609,026	+		CCNA_03445	0.13	+0.5
3,609,071	+		CCNA_03445	0.15	+0.4
3,609,079	-		CCNA_03445	0.15	-0.9
3,609,093	+		CCNA_03445	0.16	+0.3
3,609,098	+		CCNA_03445	0.16	-0.8
3,609,101	-		CCNA_03445	0.16	-0.1
3,609,101	-		CCNA_03445	0.16	-0.9
3,609,130	-		CCNA_03445	0.18	-1.2
3,609,141	+		CCNA_03445	0.18	+1.0
3,609,168	-		CCNA_03445	0.19	+1.1
3,609,230	+		CCNA_03445	0.22	-1.3
3,609,230	+		CCNA_03445	0.22	-0.6
3,609,238	-		CCNA_03445	0.22	-1.5
3,609,238	-		CCNA_03445	0.22	+0.4
3,609,240	+		CCNA_03445	0.22	-0.8
3,609,256	-		CCNA_03445	0.23	-0.7
3,609,293	+		CCNA_03445	0.24	+0.1
3,609,305	+		CCNA_03445	0.25	-0.8
3,609,307	-		CCNA_03445	0.25	-0.5
3,609,329	+		CCNA_03445	0.26	-0.2
3,609,329	+		CCNA_03445	0.26	-0.4
3,609,329	+		CCNA_03445	0.26	+0.4
3,609,337	-		CCNA_03445	0.26	-0.7
3,609,338	-		CCNA_03445	0.26	-1.4
3,609,380	+		CCNA_03445	0.28	-1.3
3,609,388	-		CCNA_03445	0.28	+0.5
3,609,388	-				+2.3
3,609,415	-		CCNA_03445	0.29	+0.3
3,609,444	+		CCNA_03445	0.31	+0.0
3,609,452	-		CCNA_03445	0.31	+0.1
3,609,463	+		CCNA_03445	0.31	-0.1
3,609,477	+		CCNA_03445	0.32	+0.9
3,609,478	+		CCNA_03445	0.32	+1.0
3,609,486	-		CCNA_03445	0.32	-2.0
3,609,490	-		CCNA_03445	0.32	-1.2
3,609,512	-		CCNA_03445	0.33	-1.2
3,609,556	+		CCNA_03445	0.35	-0.2
3,609,563	+		CCNA_03445	0.35	+0.9
3,609,563	+		CCNA_03445	0.35	-0.9
3,609,563	+		CCNA_03445	0.35	+0.1
3,609,571	-		CCNA_03445	0.36	-2.2
3,609,571	-		CCNA_03445	0.36	+0.5
3,609,591	+		CCNA_03445	0.37	-3.0
3,609,610	+		CCNA_03445	0.37	+0.6
3,609,610	+		CCNA_03445	0.37	-0.1
3,609,655	+		CCNA_03445	0.39	+2.1
3,609,663	-		CCNA_03445	0.40	-0.7
3,609,674	-		CCNA_03445	0.40	-1.0
3,609,692	+		CCNA_03445	0.41	+0.3
3,609,700	-		CCNA_03445	0.41	-0.3
3,609,723	-		CCNA_03445	0.42	-0.5
3,609,723	-		CCNA_03445	0.42	-0.5
3,609,803	+		CCNA_03445	0.45	+1.2
3,609,803	+		CCNA_03445	0.45	+5.6
3,609,836	+		CCNA_03445	0.47	-0.4
3,609,880	+		CCNA_03445	0.49	+0.9
3,609,883	-		CCNA_03445	0.49	-0.4
3,609,888	-		CCNA_03445	0.49	+1.3
3,609,924	+		CCNA_03445	0.50	+0.7
3,609,924	+		CCNA_03445	0.50	+0.9
3,609,932	-		CCNA_03445	0.51	-0.7
3,609,932	-		CCNA_03445	0.51	-0.1
3,609,945	+		CCNA_03445	0.51	+1.6
3,609,966	-		CCNA_03445	0.52	+0.3
3,609,968	+		CCNA_03445	0.52	+1.2
3,609,976	-		CCNA_03445	0.53	-0.5
3,609,976	-		CCNA_03445	0.53	-2.4
3,610,042	+		CCNA_03445	0.55	+0.9
3,610,042	+		CCNA_03445	0.55	+1.0
3,610,050	-		CCNA_03445	0.56	+0.0
3,610,057	+		CCNA_03445	0.56	+1.6
3,610,057	+		CCNA_03445	0.56	-0.0
3,610,057	+		CCNA_03445	0.56	+1.3
3,610,063	+		CCNA_03445	0.56	+2.9
3,610,063	+		CCNA_03445	0.56	-0.0
3,610,065	-		CCNA_03445	0.56	-0.4
3,610,065	-		CCNA_03445	0.56	-1.2
3,610,071	-		CCNA_03445	0.56	-1.0
3,610,073	+		CCNA_03445	0.57	-1.7
3,610,091	-		CCNA_03445	0.57	-0.8
3,610,093	+		CCNA_03445	0.57	+0.6
3,610,101	-		CCNA_03445	0.58	-1.2
3,610,119	+		CCNA_03445	0.58	+0.3
3,610,173	+		CCNA_03445	0.61	+0.7
3,610,203	+		CCNA_03445	0.62	-0.4
3,610,226	-		CCNA_03445	0.63	-2.1
3,610,279	-		CCNA_03445	0.65	+3.9
3,610,285	+		CCNA_03445	0.65	+0.9
3,610,285	+		CCNA_03445	0.65	+0.6
3,610,285	+		CCNA_03445	0.65	+1.4
3,610,285	+		CCNA_03445	0.65	-1.5
3,610,289	+		CCNA_03445	0.65	-1.0
3,610,290	+		CCNA_03445	0.66	-2.6
3,610,290	+		CCNA_03445	0.66	-0.4
3,610,290	+		CCNA_03445	0.66	+1.4
3,610,293	-		CCNA_03445	0.66	+1.0
3,610,293	-		CCNA_03445	0.66	+1.0
3,610,293	-		CCNA_03445	0.66	-0.5
3,610,298	-		CCNA_03445	0.66	+0.7
3,610,330	-		CCNA_03445	0.67	-0.8
3,610,360	-		CCNA_03445	0.68	-0.2
3,610,401	+		CCNA_03445	0.70	+1.5
3,610,433	-		CCNA_03445	0.71	-1.6
3,610,491	+		CCNA_03445	0.74	-1.0
3,610,496	+		CCNA_03445	0.74	+0.5
3,610,527	+		CCNA_03445	0.75	-0.0
3,610,529	+		CCNA_03445	0.75	-1.1
3,610,542	+		CCNA_03445	0.76	+0.4
3,610,567	-		CCNA_03445	0.77	+0.2
3,610,574	-		CCNA_03445	0.77	-0.2
3,610,576	+		CCNA_03445	0.77	-0.4
3,610,589	-		CCNA_03445	0.78	-0.7
3,610,598	+		CCNA_03445	0.78	-0.2
3,610,598	+		CCNA_03445	0.78	-0.5
3,610,606	-		CCNA_03445	0.79	-0.5
3,610,614	+		CCNA_03445	0.79	+1.5
3,610,619	+		CCNA_03445	0.79	-0.9
3,610,622	-		CCNA_03445	0.79	-2.0
3,610,632	+		CCNA_03445	0.80	+1.4
3,610,647	+		CCNA_03445	0.80	+0.1
3,610,650	-		CCNA_03445	0.80	-0.4
3,610,655	-		CCNA_03445	0.81	+0.3
3,610,655	-		CCNA_03445	0.81	+0.3
3,610,674	-		CCNA_03445	0.81	+0.8
3,610,680	+		CCNA_03445	0.82	+0.2
3,610,722	+		CCNA_03445	0.83	+0.1
3,610,750	+		CCNA_03445	0.85	+0.1
3,610,750	+		CCNA_03445	0.85	+1.1
3,610,750	+		CCNA_03445	0.85	+0.6
3,610,750	+		CCNA_03445	0.85	-0.5
3,610,750	+		CCNA_03445	0.85	+0.1
3,610,750	+		CCNA_03445	0.85	+0.7
3,610,758	-		CCNA_03445	0.85	+1.3
3,610,758	-		CCNA_03445	0.85	+0.1
3,610,758	-		CCNA_03445	0.85	-0.2
3,610,758	-		CCNA_03445	0.85	+0.4
3,610,758	-		CCNA_03445	0.85	-0.3
3,610,773	+		CCNA_03445	0.85	+0.7
3,610,813	+		CCNA_03445	0.87	+2.3
3,610,813	+		CCNA_03445	0.87	-0.4
3,610,821	-		CCNA_03445	0.87	+2.0
3,610,836	-		CCNA_03445	0.88	-0.1
3,610,846	+		CCNA_03445	0.89	+0.5
3,610,848	+		CCNA_03445	0.89	-0.2
3,610,912	+				+1.3
3,610,912	+				-0.0
3,610,917	+				+0.2
3,610,925	-				+0.4
3,610,925	-				-0.8
3,610,930	-				+1.7
3,610,953	+				+0.4
3,610,956	-				-1.3
3,610,961	-				+0.9
3,610,975	+				-1.4
3,610,983	-				+0.8
3,610,983	-				+0.6
3,610,983	-				-1.2
3,610,985	+				-0.0
3,610,985	+				+0.2
3,610,985	+				+0.4
3,611,030	+				+0.8
3,611,033	-				-1.8
3,611,038	-				-2.6
3,611,053	+				-0.2
3,611,061	-				+0.6
3,611,081	+				-1.1
3,611,110	-				+0.1
3,611,114	+				+0.8
3,611,114	+				+0.0
3,611,114	+				-2.7
3,611,122	-				-0.2
3,611,122	-				+0.6
3,611,122	-				+0.2
3,611,122	-				-0.0
3,611,125	+				-2.2
3,611,135	+				+0.6
3,611,180	-				+0.8
3,611,204	-				-0.4
3,611,204	-				-0.5
3,611,206	+				-0.3
3,611,209	-				-0.5
3,611,216	+				+0.5
3,611,224	-				+0.3
3,611,224	-				-0.0
3,611,227	+				-1.3
3,611,233	+				-0.0
3,611,249	+				-2.4
3,611,268	+				-0.4
3,611,359	-		CCNA_03446	0.12	-0.7
3,611,396	-		CCNA_03446	0.14	-0.2
3,611,414	+		CCNA_03446	0.15	-0.3
3,611,431	+		CCNA_03446	0.16	-2.2
3,611,431	+		CCNA_03446	0.16	+0.4
3,611,431	+		CCNA_03446	0.16	-1.0
3,611,431	+		CCNA_03446	0.16	-1.8
3,611,438	+		CCNA_03446	0.17	+0.4
3,611,438	+		CCNA_03446	0.17	+0.3
3,611,438	+		CCNA_03446	0.17	+3.3
3,611,439	-		CCNA_03446	0.17	+1.0
3,611,446	-		CCNA_03446	0.17	+0.4
3,611,446	-		CCNA_03446	0.17	-1.0
3,611,451	-		CCNA_03446	0.17	-1.1
3,611,452	+		CCNA_03446	0.17	-0.0
3,611,470	+		CCNA_03446	0.18	+0.1
3,611,519	-		CCNA_03446	0.21	+1.3
3,611,523	+		CCNA_03446	0.21	-0.1
3,611,524	-		CCNA_03446	0.21	-0.3
3,611,531	-		CCNA_03446	0.22	-2.5
3,611,548	+		CCNA_03446	0.23	-0.5
3,611,548	-		CCNA_03446	0.23	-0.1
3,611,625	+		CCNA_03446	0.27	+1.5
3,611,625	+		CCNA_03446	0.27	-0.8
3,611,625	+		CCNA_03446	0.27	-0.7
3,611,625	+		CCNA_03446	0.27	+0.7
3,611,625	+		CCNA_03446	0.27	+1.1
3,611,625	+		CCNA_03446	0.27	-0.3
3,611,632	-		CCNA_03446	0.27	+0.4
3,611,633	-		CCNA_03446	0.27	-1.2
3,611,633	-		CCNA_03446	0.27	-0.5
3,611,695	+		CCNA_03446	0.30	-0.7
3,611,715	+		CCNA_03446	0.31	-1.2
3,611,741	+		CCNA_03446	0.33	-0.5
3,611,785	-		CCNA_03446	0.35	+1.7
3,611,802	-		CCNA_03446	0.36	+2.3
3,611,804	-		CCNA_03446	0.36	-2.1
3,611,808	+		CCNA_03446	0.36	+0.5
3,611,810	+		CCNA_03446	0.37	-0.4
3,611,817	-		CCNA_03446	0.37	-0.9
3,611,826	+		CCNA_03446	0.37	-0.3
3,611,839	-		CCNA_03446	0.38	+1.3
3,611,840	+		CCNA_03446	0.38	-1.2
3,611,875	-				-2.3
3,611,879	+		CCNA_03446	0.40	+0.3
3,611,904	+		CCNA_03446	0.42	+0.4
3,611,911	+		CCNA_03446	0.42	-0.5
3,611,911	+		CCNA_03446	0.42	-0.5
3,611,916	+		CCNA_03446	0.42	+1.3
3,611,919	-		CCNA_03446	0.42	-0.6
3,611,919	-		CCNA_03446	0.42	-0.9
3,611,919	-		CCNA_03446	0.42	-1.6
3,611,934	-		CCNA_03446	0.43	-0.5
3,611,941	+		CCNA_03446	0.44	-0.9
3,611,965	+		CCNA_03446	0.45	-0.6
3,611,970	+		CCNA_03446	0.45	-0.5
3,611,970	+		CCNA_03446	0.45	-1.2
3,611,973	-		CCNA_03446	0.45	-3.8
3,611,978	-		CCNA_03446	0.46	-1.6
3,611,978	-		CCNA_03446	0.46	-0.2
3,611,988	-		CCNA_03446	0.46	+1.0
3,612,021	-		CCNA_03446	0.48	-1.4
3,612,032	-		CCNA_03446	0.48	-2.3
3,612,046	+		CCNA_03446	0.49	-1.1
3,612,063	-		CCNA_03446	0.50	-1.3
3,612,067	+		CCNA_03446	0.50	+1.3
3,612,102	-		CCNA_03446	0.52	-0.3
3,612,119	-		CCNA_03446	0.53	-1.2
3,612,122	+		CCNA_03446	0.53	-2.0