Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2448

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2447 and DvMF_2448 are separated by 260 nucleotidesDvMF_2448 and DvMF_2449 are separated by 394 nucleotides DvMF_2447: DvMF_2447 - protein of unknown function DUF399 (RefSeq), at 3,081,122 to 3,082,807 _2447 DvMF_2448: DvMF_2448 - CopG domain protein DNA-binding domain protein (RefSeq), at 3,083,068 to 3,083,475 _2448 DvMF_2449: DvMF_2449 - formamidopyrimidine-DNA glycosylase (RefSeq), at 3,083,870 to 3,084,880 _2449 Position (kb) 3083 3084Strain fitness (log2 ratio) -1 0 1at 3082.230 kb on + strand, within DvMF_2447at 3082.314 kb on - strand, within DvMF_2447at 3082.476 kb on + strand, within DvMF_2447at 3082.740 kb on + strandat 3082.875 kb on + strandat 3082.971 kb on - strandat 3083.045 kb on + strandat 3083.086 kb on - strandat 3083.162 kb on + strand, within DvMF_2448at 3083.321 kb on + strand, within DvMF_2448at 3083.345 kb on + strand, within DvMF_2448at 3083.350 kb on + strand, within DvMF_2448at 3083.363 kb on - strand, within DvMF_2448at 3083.871 kb on + strandat 3083.874 kb on - strandat 3083.895 kb on - strandat 3083.969 kb on + strandat 3083.969 kb on + strandat 3083.998 kb on + strand, within DvMF_2449at 3084.056 kb on + strand, within DvMF_2449

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,082,230 + DvMF_2447 0.66 -0.3
3,082,314 - DvMF_2447 0.71 -1.2
3,082,476 + DvMF_2447 0.80 -0.5
3,082,740 + +0.5
3,082,875 + -0.2
3,082,971 - -0.1
3,083,045 + -0.9
3,083,086 - -0.3
3,083,162 + DvMF_2448 0.23 -0.4
3,083,321 + DvMF_2448 0.62 +0.3
3,083,345 + DvMF_2448 0.68 +0.0
3,083,350 + DvMF_2448 0.69 +0.2
3,083,363 - DvMF_2448 0.72 -0.8
3,083,871 + -0.4
3,083,874 - +0.1
3,083,895 - -0.3
3,083,969 + -0.9
3,083,969 + -0.8
3,083,998 + DvMF_2449 0.13 -0.3
3,084,056 + DvMF_2449 0.18 -0.2

Or see this region's nucleotide sequence