Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2380

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2379 and DvMF_2380 are separated by 19 nucleotidesDvMF_2380 and DvMF_2381 are separated by 236 nucleotides DvMF_2379: DvMF_2379 - ABC transporter related (RefSeq), at 3,005,797 to 3,007,779 _2379 DvMF_2380: DvMF_2380 - NUDIX hydrolase (RefSeq), at 3,007,799 to 3,008,308 _2380 DvMF_2381: DvMF_2381 - protein of unknown function DUF606 (RefSeq), at 3,008,545 to 3,008,985 _2381 Position (kb) 3007 3008 3009Strain fitness (log2 ratio) -1 0 1at 3006.891 kb on + strand, within DvMF_2379at 3006.899 kb on - strand, within DvMF_2379at 3006.936 kb on + strand, within DvMF_2379at 3006.945 kb on - strand, within DvMF_2379at 3006.989 kb on + strand, within DvMF_2379at 3006.989 kb on - strand, within DvMF_2379at 3007.071 kb on + strand, within DvMF_2379at 3007.542 kb on + strand, within DvMF_2379at 3007.590 kb on + strandat 3007.601 kb on + strandat 3007.664 kb on - strandat 3007.781 kb on - strandat 3008.025 kb on + strand, within DvMF_2380at 3008.146 kb on - strand, within DvMF_2380at 3008.186 kb on - strand, within DvMF_2380at 3008.278 kb on - strandat 3008.282 kb on + strandat 3008.290 kb on - strandat 3008.561 kb on + strandat 3008.585 kb on + strandat 3008.593 kb on - strand, within DvMF_2381at 3008.633 kb on + strand, within DvMF_2381at 3008.831 kb on - strand, within DvMF_2381at 3008.903 kb on + strand, within DvMF_2381at 3009.020 kb on - strandat 3009.080 kb on - strandat 3009.245 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,006,891 + DvMF_2379 0.55 +0.1
3,006,899 - DvMF_2379 0.56 +0.1
3,006,936 + DvMF_2379 0.57 -0.0
3,006,945 - DvMF_2379 0.58 -0.7
3,006,989 + DvMF_2379 0.60 -0.1
3,006,989 - DvMF_2379 0.60 +0.3
3,007,071 + DvMF_2379 0.64 -0.6
3,007,542 + DvMF_2379 0.88 -1.2
3,007,590 + -0.1
3,007,601 + -0.6
3,007,664 - -0.4
3,007,781 - +0.1
3,008,025 + DvMF_2380 0.44 -1.5
3,008,146 - DvMF_2380 0.68 -0.7
3,008,186 - DvMF_2380 0.76 -0.6
3,008,278 - -0.4
3,008,282 + -0.4
3,008,290 - -0.2
3,008,561 + -0.6
3,008,585 + -0.4
3,008,593 - DvMF_2381 0.11 -1.0
3,008,633 + DvMF_2381 0.20 -0.6
3,008,831 - DvMF_2381 0.65 +0.1
3,008,903 + DvMF_2381 0.81 -0.3
3,009,020 - -0.0
3,009,080 - -0.5
3,009,245 + +0.3

Or see this region's nucleotide sequence