Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2240

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0065 and DvMF_R0066 are separated by 105 nucleotidesDvMF_R0066 and DvMF_2240 are separated by 356 nucleotidesDvMF_2240 and DvMF_2241 are separated by 553 nucleotides DvMF_R0065: DvMF_R0065 - 23S ribosomal RNA (RefSeq), at 2,808,725 to 2,811,650 _R0065 DvMF_R0066: DvMF_R0066 - 5S ribosomal RNA (RefSeq), at 2,811,756 to 2,811,870 _R0066 DvMF_2240: DvMF_2240 - hypothetical protein (RefSeq), at 2,812,227 to 2,813,327 _2240 DvMF_2241: DvMF_2241 - benzoate transporter (RefSeq), at 2,813,881 to 2,815,104 _2241 Position (kb) 2812 2813 2814Strain fitness (log2 ratio) -1 0 1at 2812.070 kb on - strandat 2812.150 kb on + strandat 2812.453 kb on + strand, within DvMF_2240at 2812.453 kb on + strand, within DvMF_2240at 2812.461 kb on - strand, within DvMF_2240at 2812.550 kb on + strand, within DvMF_2240at 2812.735 kb on + strand, within DvMF_2240at 2812.919 kb on + strand, within DvMF_2240at 2813.112 kb on - strand, within DvMF_2240at 2813.112 kb on - strand, within DvMF_2240at 2813.241 kb on - strandat 2813.297 kb on + strandat 2813.337 kb on - strandat 2813.517 kb on + strandat 2813.565 kb on + strandat 2813.630 kb on + strandat 2813.729 kb on + strandat 2813.864 kb on + strandat 2813.919 kb on - strandat 2814.068 kb on + strand, within DvMF_2241at 2814.076 kb on - strand, within DvMF_2241at 2814.153 kb on + strand, within DvMF_2241at 2814.210 kb on - strand, within DvMF_2241at 2814.326 kb on - strand, within DvMF_2241

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,812,070 - -0.6
2,812,150 + -0.4
2,812,453 + DvMF_2240 0.21 -0.7
2,812,453 + DvMF_2240 0.21 -0.7
2,812,461 - DvMF_2240 0.21 -1.0
2,812,550 + DvMF_2240 0.29 -0.1
2,812,735 + DvMF_2240 0.46 -0.7
2,812,919 + DvMF_2240 0.63 -0.3
2,813,112 - DvMF_2240 0.80 -0.5
2,813,112 - DvMF_2240 0.80 -0.6
2,813,241 - -0.4
2,813,297 + -0.5
2,813,337 - -0.4
2,813,517 + -0.5
2,813,565 + -0.0
2,813,630 + -1.0
2,813,729 + -0.4
2,813,864 + +0.0
2,813,919 - -0.4
2,814,068 + DvMF_2241 0.15 -0.6
2,814,076 - DvMF_2241 0.16 -0.4
2,814,153 + DvMF_2241 0.22 -0.7
2,814,210 - DvMF_2241 0.27 -0.2
2,814,326 - DvMF_2241 0.36 -0.6

Or see this region's nucleotide sequence