Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1575 and DvMF_1576 are separated by 795 nucleotides DvMF_1576 and DvMF_1577 are separated by 170 nucleotides DvMF_1577 and DvMF_R0045 are separated by 200 nucleotides DvMF_R0045 and DvMF_R0046 are separated by 99 nucleotides DvMF_R0046 and DvMF_R0047 are separated by 6 nucleotides
DvMF_1575: DvMF_1575 - sulfate transporter (RefSeq), at 1,941,786 to 1,943,498
_1575
DvMF_1576: DvMF_1576 - transcriptional regulator, AraC family (RefSeq), at 1,944,294 to 1,945,604
_1576
DvMF_1577: DvMF_1577 - hypothetical protein (RefSeq), at 1,945,775 to 1,946,011
_1577
DvMF_R0045: DvMF_R0045 - tRNA-Asp (RefSeq), at 1,946,212 to 1,946,288
_R0045
DvMF_R0046: DvMF_R0046 - tRNA-Asp (RefSeq), at 1,946,388 to 1,946,464
_R0046
DvMF_R0047: DvMF_R0047 - tRNA-Val (RefSeq), at 1,946,471 to 1,946,546
_R0047
Position (kb)
1944
1945
1946 Strain fitness (log2 ratio)
-1
0
1 at 1943.374 kb on + strand at 1943.488 kb on + strand at 1943.496 kb on - strand at 1943.717 kb on - strand at 1943.719 kb on - strand at 1943.780 kb on + strand at 1943.942 kb on - strand at 1943.972 kb on + strand at 1944.261 kb on + strand at 1944.351 kb on + strand at 1944.361 kb on + strand at 1944.371 kb on + strand at 1944.549 kb on - strand, within DvMF_1576 at 1944.719 kb on - strand, within DvMF_1576 at 1944.806 kb on - strand, within DvMF_1576 at 1944.870 kb on - strand, within DvMF_1576 at 1944.939 kb on - strand, within DvMF_1576 at 1945.187 kb on + strand, within DvMF_1576 at 1945.638 kb on + strand at 1945.705 kb on - strand at 1945.768 kb on + strand at 1945.771 kb on - strand at 1945.894 kb on + strand, within DvMF_1577 at 1945.967 kb on + strand, within DvMF_1577 at 1946.070 kb on + strand at 1946.073 kb on - strand at 1946.075 kb on + strand at 1946.075 kb on + strand at 1946.083 kb on - strand at 1946.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,943,374 + -0.2 1,943,488 + -0.3 1,943,496 - -0.9 1,943,717 - -0.1 1,943,719 - +0.1 1,943,780 + -0.5 1,943,942 - -0.4 1,943,972 + -0.5 1,944,261 + -0.3 1,944,351 + -0.5 1,944,361 + -0.2 1,944,371 + -0.6 1,944,549 - DvMF_1576 0.19 -0.4 1,944,719 - DvMF_1576 0.32 -0.4 1,944,806 - DvMF_1576 0.39 -0.0 1,944,870 - DvMF_1576 0.44 -0.9 1,944,939 - DvMF_1576 0.49 -0.2 1,945,187 + DvMF_1576 0.68 -0.4 1,945,638 + -0.2 1,945,705 - -0.6 1,945,768 + +0.9 1,945,771 - -0.9 1,945,894 + DvMF_1577 0.50 -0.0 1,945,967 + DvMF_1577 0.81 +0.3 1,946,070 + -0.7 1,946,073 - +1.0 1,946,075 + -0.2 1,946,075 + -0.3 1,946,083 - -0.3 1,946,083 - -0.6
Or see this region's nucleotide sequence