Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1319

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1317 and DvMF_1318 overlap by 4 nucleotidesDvMF_1318 and DvMF_1319 are separated by 383 nucleotidesDvMF_1319 and DvMF_1320 are separated by 228 nucleotidesDvMF_1320 and DvMF_1321 are separated by 18 nucleotides DvMF_1317: DvMF_1317 - ABC transporter related (RefSeq), at 1,609,604 to 1,610,359 _1317 DvMF_1318: DvMF_1318 - BioY protein (RefSeq), at 1,610,356 to 1,610,925 _1318 DvMF_1319: DvMF_1319 - Lipocalin (RefSeq), at 1,611,309 to 1,612,091 _1319 DvMF_1320: DvMF_1320 - nickel responsive regulator (RefSeq), at 1,612,320 to 1,612,739 _1320 DvMF_1321: DvMF_1321 - putative GTP cyclohydrolase (RefSeq), at 1,612,758 to 1,613,537 _1321 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -1 0 1at 1610.370 kb on - strandat 1610.679 kb on + strand, within DvMF_1318at 1610.810 kb on - strand, within DvMF_1318at 1610.843 kb on + strand, within DvMF_1318at 1611.063 kb on - strandat 1611.100 kb on + strandat 1611.190 kb on + strandat 1611.208 kb on - strandat 1611.488 kb on + strand, within DvMF_1319at 1611.583 kb on + strand, within DvMF_1319at 1611.591 kb on - strand, within DvMF_1319at 1611.722 kb on + strand, within DvMF_1319at 1611.771 kb on + strand, within DvMF_1319at 1612.354 kb on + strandat 1612.354 kb on + strandat 1612.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,610,370 - -1.1
1,610,679 + DvMF_1318 0.57 -0.4
1,610,810 - DvMF_1318 0.80 -0.5
1,610,843 + DvMF_1318 0.85 -1.2
1,611,063 - +0.6
1,611,100 + -0.9
1,611,190 + +0.5
1,611,208 - -0.7
1,611,488 + DvMF_1319 0.23 -0.6
1,611,583 + DvMF_1319 0.35 -0.2
1,611,591 - DvMF_1319 0.36 +0.6
1,611,722 + DvMF_1319 0.53 -0.2
1,611,771 + DvMF_1319 0.59 -0.4
1,612,354 + -0.4
1,612,354 + -0.1
1,612,743 - +0.1

Or see this region's nucleotide sequence