Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1234 and DvMF_1235 are separated by 55 nucleotides DvMF_1235 and DvMF_1236 are separated by 134 nucleotides DvMF_1236 and DvMF_1237 are separated by 304 nucleotides DvMF_1237 and DvMF_1238 are separated by 98 nucleotides
DvMF_1234: DvMF_1234 - methionine-R-sulfoxide reductase (RefSeq), at 1,522,581 to 1,523,453
_1234
DvMF_1235: DvMF_1235 - hypothetical protein (RefSeq), at 1,523,509 to 1,523,808
_1235
DvMF_1236: DvMF_1236 - hypothetical protein (RefSeq), at 1,523,943 to 1,524,692
_1236
DvMF_1237: DvMF_1237 - CreA family protein (RefSeq), at 1,524,997 to 1,525,536
_1237
DvMF_1238: DvMF_1238 - spermine synthase (RefSeq), at 1,525,635 to 1,527,209
_1238
Position (kb)
1523
1524
1525 Strain fitness (log2 ratio)
-1
0
1 at 1523.062 kb on - strand, within DvMF_1234 at 1523.292 kb on - strand, within DvMF_1234 at 1523.483 kb on + strand at 1523.501 kb on - strand at 1523.527 kb on - strand at 1524.021 kb on - strand, within DvMF_1236 at 1524.035 kb on + strand, within DvMF_1236 at 1524.884 kb on - strand at 1525.011 kb on + strand at 1525.291 kb on - strand, within DvMF_1237 at 1525.383 kb on - strand, within DvMF_1237 at 1525.536 kb on + strand at 1525.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,523,062 - DvMF_1234 0.55 -0.4 1,523,292 - DvMF_1234 0.81 -0.6 1,523,483 + -0.2 1,523,501 - -0.8 1,523,527 - -0.4 1,524,021 - DvMF_1236 0.10 -1.3 1,524,035 + DvMF_1236 0.12 -0.5 1,524,884 - -1.1 1,525,011 + -0.4 1,525,291 - DvMF_1237 0.54 -0.4 1,525,383 - DvMF_1237 0.71 -0.2 1,525,536 + -0.3 1,525,653 + -0.2
Or see this region's nucleotide sequence