Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1236

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1234 and DvMF_1235 are separated by 55 nucleotidesDvMF_1235 and DvMF_1236 are separated by 134 nucleotidesDvMF_1236 and DvMF_1237 are separated by 304 nucleotidesDvMF_1237 and DvMF_1238 are separated by 98 nucleotides DvMF_1234: DvMF_1234 - methionine-R-sulfoxide reductase (RefSeq), at 1,522,581 to 1,523,453 _1234 DvMF_1235: DvMF_1235 - hypothetical protein (RefSeq), at 1,523,509 to 1,523,808 _1235 DvMF_1236: DvMF_1236 - hypothetical protein (RefSeq), at 1,523,943 to 1,524,692 _1236 DvMF_1237: DvMF_1237 - CreA family protein (RefSeq), at 1,524,997 to 1,525,536 _1237 DvMF_1238: DvMF_1238 - spermine synthase (RefSeq), at 1,525,635 to 1,527,209 _1238 Position (kb) 1523 1524 1525Strain fitness (log2 ratio) -1 0 1at 1523.062 kb on - strand, within DvMF_1234at 1523.292 kb on - strand, within DvMF_1234at 1523.483 kb on + strandat 1523.501 kb on - strandat 1523.527 kb on - strandat 1524.021 kb on - strand, within DvMF_1236at 1524.035 kb on + strand, within DvMF_1236at 1524.884 kb on - strandat 1525.011 kb on + strandat 1525.291 kb on - strand, within DvMF_1237at 1525.383 kb on - strand, within DvMF_1237at 1525.536 kb on + strandat 1525.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,523,062 - DvMF_1234 0.55 -0.4
1,523,292 - DvMF_1234 0.81 -0.6
1,523,483 + -0.2
1,523,501 - -0.8
1,523,527 - -0.4
1,524,021 - DvMF_1236 0.10 -1.3
1,524,035 + DvMF_1236 0.12 -0.5
1,524,884 - -1.1
1,525,011 + -0.4
1,525,291 - DvMF_1237 0.54 -0.4
1,525,383 - DvMF_1237 0.71 -0.2
1,525,536 + -0.3
1,525,653 + -0.2

Or see this region's nucleotide sequence