Experiment: MoLS4 with L-Serine (N) without Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0104.1 and DORF831 are separated by 2 nucleotides DORF831 and DVUA0105 overlap by 4 nucleotides DVUA0105 and DVUA0106 are separated by 2 nucleotides DVUA0106 and DORF2077 are separated by 706 nucleotides
DVUA0104.1: DVUA0104.1 - no description, at 142,418 to 142,777
DVUA0104.1
DORF831: DORF831 - SEED: FIG00602593: hypothetical protein, at 142,780 to 143,148
DORF831
DVUA0105: DVUA0105 - conserved hypothetical protein (TIGR), at 143,145 to 143,519
DVUA0105
DVUA0106: DVUA0106 - type III secretion target, YopN family (TIGR), at 143,522 to 144,646
DVUA0106
DORF2077: DORF2077 - SEED: FIG00603320: hypothetical protein, at 145,353 to 145,655
DORF2077
DVUA0108: DVUA0108 - hypothetical protein (TIGR), at 145,580 to 146,200
DVUA0108
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 142.522 kb on - strand, within DVUA0104.1 at 142.605 kb on - strand, within DVUA0104.1 at 142.627 kb on + strand, within DVUA0104.1 at 142.640 kb on - strand, within DVUA0104.1 at 142.696 kb on + strand, within DVUA0104.1 at 142.731 kb on - strand, within DVUA0104.1 at 142.786 kb on - strand at 143.040 kb on - strand, within DORF831 at 143.275 kb on + strand, within DVUA0105 at 143.345 kb on - strand, within DVUA0105 at 143.475 kb on - strand, within DVUA0105 at 143.508 kb on + strand at 143.516 kb on - strand at 143.519 kb on + strand at 143.572 kb on - strand at 143.575 kb on - strand at 143.578 kb on - strand at 143.579 kb on + strand at 143.597 kb on - strand at 143.785 kb on + strand, within DVUA0106 at 143.806 kb on + strand, within DVUA0106 at 143.814 kb on - strand, within DVUA0106 at 143.814 kb on - strand, within DVUA0106 at 143.833 kb on + strand, within DVUA0106 at 143.892 kb on - strand, within DVUA0106 at 143.906 kb on + strand, within DVUA0106 at 143.906 kb on + strand, within DVUA0106 at 143.914 kb on - strand, within DVUA0106 at 143.916 kb on - strand, within DVUA0106 at 143.962 kb on - strand, within DVUA0106 at 144.009 kb on + strand, within DVUA0106 at 144.050 kb on + strand, within DVUA0106 at 144.090 kb on - strand, within DVUA0106 at 144.148 kb on + strand, within DVUA0106 at 144.339 kb on - strand, within DVUA0106 at 144.353 kb on + strand, within DVUA0106 at 144.353 kb on + strand, within DVUA0106 at 144.353 kb on + strand, within DVUA0106 at 144.353 kb on + strand, within DVUA0106 at 144.361 kb on - strand, within DVUA0106 at 144.391 kb on - strand, within DVUA0106 at 144.439 kb on - strand, within DVUA0106 at 144.488 kb on + strand, within DVUA0106 at 144.551 kb on + strand at 144.559 kb on - strand at 144.578 kb on - strand at 144.584 kb on + strand at 144.585 kb on + strand at 144.600 kb on + strand at 144.836 kb on + strand at 144.842 kb on + strand at 144.874 kb on + strand at 144.906 kb on + strand at 144.914 kb on - strand at 144.941 kb on - strand at 144.977 kb on + strand at 144.985 kb on - strand at 145.013 kb on + strand at 145.030 kb on + strand at 145.064 kb on - strand at 145.206 kb on + strand at 145.214 kb on - strand at 145.335 kb on - strand at 145.335 kb on - strand at 145.343 kb on - strand at 145.400 kb on - strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.466 kb on + strand, within DORF2077 at 145.495 kb on - strand, within DORF2077 at 145.517 kb on + strand, within DORF2077 at 145.543 kb on - strand, within DORF2077 at 145.577 kb on + strand, within DORF2077 at 145.580 kb on + strand at 145.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Tungstate remove 142,522 - DVUA0104.1 0.29 -0.0 142,605 - DVUA0104.1 0.52 -0.6 142,627 + DVUA0104.1 0.58 -0.5 142,640 - DVUA0104.1 0.62 -0.0 142,696 + DVUA0104.1 0.77 -0.1 142,731 - DVUA0104.1 0.87 -0.1 142,786 - -0.8 143,040 - DORF831 0.70 +0.4 143,275 + DVUA0105 0.35 -0.2 143,345 - DVUA0105 0.53 -0.0 143,475 - DVUA0105 0.88 +0.1 143,508 + -0.3 143,516 - +0.1 143,519 + -0.1 143,572 - +0.3 143,575 - -0.3 143,578 - +0.2 143,579 + +0.1 143,597 - -0.8 143,785 + DVUA0106 0.23 +0.3 143,806 + DVUA0106 0.25 -0.5 143,814 - DVUA0106 0.26 +0.2 143,814 - DVUA0106 0.26 -0.2 143,833 + DVUA0106 0.28 +0.1 143,892 - DVUA0106 0.33 +0.2 143,906 + DVUA0106 0.34 +0.0 143,906 + DVUA0106 0.34 +0.1 143,914 - DVUA0106 0.35 +0.2 143,916 - DVUA0106 0.35 -0.0 143,962 - DVUA0106 0.39 +0.0 144,009 + DVUA0106 0.43 -0.1 144,050 + DVUA0106 0.47 +0.6 144,090 - DVUA0106 0.50 -0.7 144,148 + DVUA0106 0.56 +0.0 144,339 - DVUA0106 0.73 +0.5 144,353 + DVUA0106 0.74 +0.2 144,353 + DVUA0106 0.74 -0.1 144,353 + DVUA0106 0.74 +0.3 144,353 + DVUA0106 0.74 -0.8 144,361 - DVUA0106 0.75 +0.9 144,391 - DVUA0106 0.77 +0.4 144,439 - DVUA0106 0.82 -0.4 144,488 + DVUA0106 0.86 +0.2 144,551 + +1.8 144,559 - +1.2 144,578 - -0.1 144,584 + +0.0 144,585 + -0.6 144,600 + +0.2 144,836 + -0.3 144,842 + -0.1 144,874 + +0.1 144,906 + -0.4 144,914 - +0.0 144,941 - -0.1 144,977 + +0.1 144,985 - +0.1 145,013 + -0.0 145,030 + -0.1 145,064 - -0.5 145,206 + -2.6 145,214 - -0.9 145,335 - -0.1 145,335 - -2.0 145,343 - -1.0 145,400 - DORF2077 0.16 -0.2 145,448 + DORF2077 0.31 -0.2 145,448 + DORF2077 0.31 -0.4 145,466 + DORF2077 0.37 -0.1 145,495 - DORF2077 0.47 -0.1 145,517 + DORF2077 0.54 -0.2 145,543 - DORF2077 0.63 -0.3 145,577 + DORF2077 0.74 +0.1 145,580 + -0.2 145,599 + -1.1
Or see this region's nucleotide sequence