Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06454

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06454 and H281DRAFT_06455 are separated by 159 nucleotidesH281DRAFT_06455 and H281DRAFT_06456 overlap by 102 nucleotides H281DRAFT_06454: H281DRAFT_06454 - NAD(P)H-nitrite reductase, at 63,281 to 64,810 _06454 H281DRAFT_06455: H281DRAFT_06455 - transcriptional regulator, TraR/DksA family, at 64,970 to 65,350 _06455 H281DRAFT_06456: H281DRAFT_06456 - hypothetical protein, at 65,249 to 65,656 _06456 Position (kb) 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1at 62.326 kb on + strandat 62.326 kb on + strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.330 kb on + strandat 62.331 kb on - strandat 62.511 kb on + strandat 62.592 kb on + strandat 62.593 kb on - strandat 62.840 kb on - strandat 62.868 kb on + strandat 62.869 kb on - strandat 62.869 kb on - strandat 63.048 kb on - strandat 63.177 kb on + strandat 63.177 kb on + strandat 63.383 kb on - strandat 63.713 kb on - strand, within H281DRAFT_06454at 63.731 kb on + strand, within H281DRAFT_06454at 63.754 kb on + strand, within H281DRAFT_06454at 63.755 kb on - strand, within H281DRAFT_06454at 63.755 kb on - strand, within H281DRAFT_06454at 63.776 kb on + strand, within H281DRAFT_06454at 63.854 kb on + strand, within H281DRAFT_06454at 64.075 kb on + strand, within H281DRAFT_06454at 64.231 kb on + strand, within H281DRAFT_06454at 64.231 kb on + strand, within H281DRAFT_06454at 64.237 kb on - strand, within H281DRAFT_06454at 64.381 kb on - strand, within H281DRAFT_06454at 64.417 kb on - strand, within H281DRAFT_06454at 64.493 kb on - strand, within H281DRAFT_06454at 64.502 kb on + strand, within H281DRAFT_06454at 64.620 kb on - strand, within H281DRAFT_06454at 64.620 kb on - strand, within H281DRAFT_06454at 64.622 kb on - strand, within H281DRAFT_06454at 64.638 kb on - strand, within H281DRAFT_06454at 64.932 kb on - strandat 64.976 kb on - strandat 65.153 kb on + strand, within H281DRAFT_06455at 65.153 kb on + strand, within H281DRAFT_06455at 65.153 kb on + strand, within H281DRAFT_06455at 65.153 kb on + strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.240 kb on + strand, within H281DRAFT_06455at 65.241 kb on - strand, within H281DRAFT_06455at 65.241 kb on - strand, within H281DRAFT_06455at 65.258 kb on - strandat 65.258 kb on - strandat 65.490 kb on + strand, within H281DRAFT_06456at 65.491 kb on - strand, within H281DRAFT_06456at 65.498 kb on - strand, within H281DRAFT_06456at 65.498 kb on - strand, within H281DRAFT_06456at 65.500 kb on + strand, within H281DRAFT_06456at 65.587 kb on - strand, within H281DRAFT_06456at 65.688 kb on + strandat 65.734 kb on + strandat 65.806 kb on - strandat 65.806 kb on - strandat 65.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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62,326 + -1.5
62,326 + -0.3
62,327 - -1.1
62,327 - -0.4
62,327 - +0.7
62,327 - +0.2
62,327 - -0.4
62,330 + +0.1
62,331 - +0.2
62,511 + -1.0
62,592 + -1.7
62,593 - +1.3
62,840 - +1.3
62,868 + -1.1
62,869 - -0.9
62,869 - -1.0
63,048 - +0.2
63,177 + -0.0
63,177 + -0.5
63,383 - +1.5
63,713 - H281DRAFT_06454 0.28 -1.1
63,731 + H281DRAFT_06454 0.29 -0.5
63,754 + H281DRAFT_06454 0.31 -0.2
63,755 - H281DRAFT_06454 0.31 -0.8
63,755 - H281DRAFT_06454 0.31 -0.7
63,776 + H281DRAFT_06454 0.32 -1.3
63,854 + H281DRAFT_06454 0.37 -0.3
64,075 + H281DRAFT_06454 0.52 -3.7
64,231 + H281DRAFT_06454 0.62 +0.1
64,231 + H281DRAFT_06454 0.62 -0.2
64,237 - H281DRAFT_06454 0.62 +1.4
64,381 - H281DRAFT_06454 0.72 +0.0
64,417 - H281DRAFT_06454 0.74 +0.4
64,493 - H281DRAFT_06454 0.79 +0.0
64,502 + H281DRAFT_06454 0.80 -2.1
64,620 - H281DRAFT_06454 0.88 +0.4
64,620 - H281DRAFT_06454 0.88 -0.2
64,622 - H281DRAFT_06454 0.88 +0.4
64,638 - H281DRAFT_06454 0.89 -0.5
64,932 - +0.9
64,976 - -0.3
65,153 + H281DRAFT_06455 0.48 +0.3
65,153 + H281DRAFT_06455 0.48 -0.3
65,153 + H281DRAFT_06455 0.48 +0.5
65,153 + H281DRAFT_06455 0.48 +0.7
65,154 - H281DRAFT_06455 0.48 -0.2
65,154 - H281DRAFT_06455 0.48 +0.6
65,154 - H281DRAFT_06455 0.48 +0.8
65,154 - H281DRAFT_06455 0.48 +0.3
65,154 - H281DRAFT_06455 0.48 -1.9
65,154 - H281DRAFT_06455 0.48 +0.6
65,240 + H281DRAFT_06455 0.71 -0.3
65,241 - H281DRAFT_06455 0.71 +0.3
65,241 - H281DRAFT_06455 0.71 +0.3
65,258 - -0.8
65,258 - +0.6
65,490 + H281DRAFT_06456 0.59 -0.3
65,491 - H281DRAFT_06456 0.59 +1.5
65,498 - H281DRAFT_06456 0.61 -0.0
65,498 - H281DRAFT_06456 0.61 -0.5
65,500 + H281DRAFT_06456 0.62 -0.1
65,587 - H281DRAFT_06456 0.83 -0.4
65,688 + -1.7
65,734 + -0.4
65,806 - -3.7
65,806 - -0.3
65,806 - +0.5

Or see this region's nucleotide sequence