Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06331 and H281DRAFT_06332 overlap by 16 nucleotides H281DRAFT_06332 and H281DRAFT_06333 overlap by 4 nucleotides
H281DRAFT_06331: H281DRAFT_06331 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 4,582 to 5,973
_06331
H281DRAFT_06332: H281DRAFT_06332 - Uncharacterized anaerobic dehydrogenase, at 5,958 to 6,272
_06332
H281DRAFT_06333: H281DRAFT_06333 - peptide/nickel transport system ATP-binding protein, at 6,269 to 8,113
_06333
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5.075 kb on + strand, within H281DRAFT_06331 at 5.225 kb on - strand, within H281DRAFT_06331 at 5.471 kb on + strand, within H281DRAFT_06331 at 5.471 kb on + strand, within H281DRAFT_06331 at 5.472 kb on - strand, within H281DRAFT_06331 at 5.489 kb on + strand, within H281DRAFT_06331 at 5.579 kb on + strand at 5.579 kb on + strand, within H281DRAFT_06331 at 5.579 kb on + strand, within H281DRAFT_06331 at 5.580 kb on - strand, within H281DRAFT_06331 at 5.709 kb on + strand, within H281DRAFT_06331 at 5.816 kb on + strand, within H281DRAFT_06331 at 5.852 kb on - strand at 5.852 kb on - strand at 5.852 kb on - strand at 5.959 kb on + strand at 5.974 kb on - strand at 6.377 kb on - strand at 6.385 kb on + strand at 6.385 kb on + strand at 6.669 kb on + strand, within H281DRAFT_06333 at 6.670 kb on - strand, within H281DRAFT_06333 at 6.927 kb on + strand, within H281DRAFT_06333 at 6.928 kb on - strand, within H281DRAFT_06333
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 5,075 + H281DRAFT_06331 0.35 -0.4 5,225 - H281DRAFT_06331 0.46 +1.2 5,471 + H281DRAFT_06331 0.64 -0.0 5,471 + H281DRAFT_06331 0.64 +0.8 5,472 - H281DRAFT_06331 0.64 +0.6 5,489 + H281DRAFT_06331 0.65 +0.8 5,579 + +0.2 5,579 + H281DRAFT_06331 0.72 -0.4 5,579 + H281DRAFT_06331 0.72 +0.3 5,580 - H281DRAFT_06331 0.72 +0.6 5,709 + H281DRAFT_06331 0.81 -2.1 5,816 + H281DRAFT_06331 0.89 +0.9 5,852 - -0.0 5,852 - -1.1 5,852 - +0.6 5,959 + -3.0 5,974 - -1.0 6,377 - +0.3 6,385 + -0.1 6,385 + +0.7 6,669 + H281DRAFT_06333 0.22 -0.6 6,670 - H281DRAFT_06333 0.22 -0.3 6,927 + H281DRAFT_06333 0.36 -1.1 6,928 - H281DRAFT_06333 0.36 -0.3
Or see this region's nucleotide sequence