Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06107 and H281DRAFT_06108 overlap by 4 nucleotides H281DRAFT_06108 and H281DRAFT_06109 are separated by 16 nucleotides H281DRAFT_06109 and H281DRAFT_06110 are separated by 59 nucleotides
H281DRAFT_06107: H281DRAFT_06107 - GTPase, G3E family, at 127,337 to 128,410
_06107
H281DRAFT_06108: H281DRAFT_06108 - hypothetical protein, at 128,407 to 128,706
_06108
H281DRAFT_06109: H281DRAFT_06109 - 3-oxoacyl-[acyl-carrier protein] reductase, at 128,723 to 129,481
_06109
H281DRAFT_06110: H281DRAFT_06110 - 3-oxoacyl-[acyl-carrier protein] reductase, at 129,541 to 130,296
_06110
Position (kb) 128
129 Strain fitness (log2 ratio) -2
-1
0
1 at 128.014 kb on + strand, within H281DRAFT_06107 at 128.045 kb on + strand, within H281DRAFT_06107 at 128.241 kb on - strand, within H281DRAFT_06107 at 128.303 kb on - strand at 128.377 kb on + strand at 128.378 kb on - strand at 128.378 kb on - strand at 128.378 kb on - strand at 128.382 kb on - strand at 128.485 kb on + strand, within H281DRAFT_06108 at 128.616 kb on - strand, within H281DRAFT_06108 at 128.747 kb on - strand at 129.009 kb on + strand, within H281DRAFT_06109 at 129.009 kb on + strand, within H281DRAFT_06109 at 129.010 kb on - strand, within H281DRAFT_06109 at 129.010 kb on - strand, within H281DRAFT_06109 at 129.396 kb on + strand, within H281DRAFT_06109 at 129.599 kb on + strand at 129.599 kb on + strand at 129.599 kb on + strand at 129.599 kb on + strand at 129.600 kb on - strand at 129.675 kb on + strand, within H281DRAFT_06110
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 128,014 + H281DRAFT_06107 0.63 +0.1 128,045 + H281DRAFT_06107 0.66 +0.3 128,241 - H281DRAFT_06107 0.84 -0.6 128,303 - -0.7 128,377 + +0.9 128,378 - -1.7 128,378 - +0.0 128,378 - -1.2 128,382 - +0.5 128,485 + H281DRAFT_06108 0.26 +1.2 128,616 - H281DRAFT_06108 0.70 +0.5 128,747 - +0.1 129,009 + H281DRAFT_06109 0.38 +0.6 129,009 + H281DRAFT_06109 0.38 +0.1 129,010 - H281DRAFT_06109 0.38 -1.1 129,010 - H281DRAFT_06109 0.38 -1.9 129,396 + H281DRAFT_06109 0.89 -2.1 129,599 + +0.5 129,599 + +0.7 129,599 + -0.5 129,599 + +1.6 129,600 - +0.1 129,675 + H281DRAFT_06110 0.18 +0.2
Or see this region's nucleotide sequence