Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06024 and H281DRAFT_06025 are separated by 97 nucleotides H281DRAFT_06025 and H281DRAFT_06026 overlap by 4 nucleotides H281DRAFT_06026 and H281DRAFT_06027 are separated by 75 nucleotides
H281DRAFT_06024: H281DRAFT_06024 - transcriptional regulator, LysR family, at 29,779 to 30,711
_06024
H281DRAFT_06025: H281DRAFT_06025 - chromate transporter, at 30,809 to 31,378
_06025
H281DRAFT_06026: H281DRAFT_06026 - chromate transporter, at 31,375 to 31,902
_06026
H281DRAFT_06027: H281DRAFT_06027 - AMP nucleosidase, at 31,978 to 33,504
_06027
Position (kb) 31
32 Strain fitness (log2 ratio) -1
0
1
2 at 30.452 kb on - strand, within H281DRAFT_06024 at 30.507 kb on - strand, within H281DRAFT_06024 at 30.723 kb on + strand at 31.136 kb on + strand at 31.136 kb on + strand, within H281DRAFT_06025 at 31.250 kb on - strand, within H281DRAFT_06025 at 31.322 kb on - strand at 31.322 kb on - strand at 31.352 kb on + strand at 31.352 kb on + strand at 31.353 kb on - strand at 31.353 kb on - strand at 31.353 kb on - strand at 31.353 kb on - strand at 31.446 kb on + strand, within H281DRAFT_06026 at 31.446 kb on + strand, within H281DRAFT_06026 at 31.652 kb on + strand, within H281DRAFT_06026 at 31.653 kb on - strand, within H281DRAFT_06026 at 31.653 kb on - strand, within H281DRAFT_06026 at 31.850 kb on + strand at 31.901 kb on - strand at 32.103 kb on - strand at 32.164 kb on + strand, within H281DRAFT_06027 at 32.164 kb on + strand, within H281DRAFT_06027 at 32.164 kb on + strand, within H281DRAFT_06027 at 32.164 kb on + strand, within H281DRAFT_06027 at 32.164 kb on + strand, within H281DRAFT_06027 at 32.164 kb on + strand, within H281DRAFT_06027 at 32.164 kb on + strand, within H281DRAFT_06027 at 32.164 kb on + strand, within H281DRAFT_06027 at 32.165 kb on - strand, within H281DRAFT_06027 at 32.165 kb on - strand, within H281DRAFT_06027 at 32.177 kb on + strand, within H281DRAFT_06027 at 32.178 kb on - strand, within H281DRAFT_06027 at 32.449 kb on + strand, within H281DRAFT_06027 at 32.449 kb on + strand, within H281DRAFT_06027 at 32.449 kb on + strand, within H281DRAFT_06027 at 32.450 kb on - strand, within H281DRAFT_06027 at 32.450 kb on - strand, within H281DRAFT_06027 at 32.469 kb on - strand, within H281DRAFT_06027 at 32.486 kb on + strand, within H281DRAFT_06027 at 32.486 kb on + strand, within H281DRAFT_06027 at 32.486 kb on + strand, within H281DRAFT_06027 at 32.487 kb on - strand, within H281DRAFT_06027 at 32.652 kb on - strand, within H281DRAFT_06027 at 32.720 kb on + strand, within H281DRAFT_06027 at 32.720 kb on + strand, within H281DRAFT_06027 at 32.721 kb on - strand, within H281DRAFT_06027 at 32.794 kb on - strand, within H281DRAFT_06027 at 32.794 kb on - strand, within H281DRAFT_06027 at 32.837 kb on + strand, within H281DRAFT_06027 at 32.846 kb on + strand, within H281DRAFT_06027 at 32.847 kb on - strand, within H281DRAFT_06027 at 32.864 kb on + strand, within H281DRAFT_06027 at 32.865 kb on - strand, within H281DRAFT_06027 at 32.865 kb on - strand, within H281DRAFT_06027 at 32.865 kb on - strand, within H281DRAFT_06027 at 32.865 kb on - strand, within H281DRAFT_06027 at 32.897 kb on + strand, within H281DRAFT_06027
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 30,452 - H281DRAFT_06024 0.72 +0.1 30,507 - H281DRAFT_06024 0.78 +0.4 30,723 + +0.4 31,136 + -1.1 31,136 + H281DRAFT_06025 0.57 +0.7 31,250 - H281DRAFT_06025 0.77 +0.7 31,322 - -0.7 31,322 - -0.3 31,352 + +0.4 31,352 + +0.6 31,353 - +0.9 31,353 - -1.1 31,353 - -1.0 31,353 - -0.8 31,446 + H281DRAFT_06026 0.13 +0.4 31,446 + H281DRAFT_06026 0.13 -0.0 31,652 + H281DRAFT_06026 0.52 +0.7 31,653 - H281DRAFT_06026 0.53 +0.3 31,653 - H281DRAFT_06026 0.53 -0.1 31,850 + -0.4 31,901 - -0.1 32,103 - +1.4 32,164 + H281DRAFT_06027 0.12 +0.1 32,164 + H281DRAFT_06027 0.12 -0.0 32,164 + H281DRAFT_06027 0.12 +1.2 32,164 + H281DRAFT_06027 0.12 +1.6 32,164 + H281DRAFT_06027 0.12 +2.0 32,164 + H281DRAFT_06027 0.12 +2.7 32,164 + H281DRAFT_06027 0.12 +1.2 32,164 + H281DRAFT_06027 0.12 +1.8 32,165 - H281DRAFT_06027 0.12 +1.7 32,165 - H281DRAFT_06027 0.12 +1.9 32,177 + H281DRAFT_06027 0.13 +1.9 32,178 - H281DRAFT_06027 0.13 +0.6 32,449 + H281DRAFT_06027 0.31 +1.4 32,449 + H281DRAFT_06027 0.31 +1.0 32,449 + H281DRAFT_06027 0.31 +1.7 32,450 - H281DRAFT_06027 0.31 +0.7 32,450 - H281DRAFT_06027 0.31 +1.5 32,469 - H281DRAFT_06027 0.32 +1.3 32,486 + H281DRAFT_06027 0.33 +1.8 32,486 + H281DRAFT_06027 0.33 +1.6 32,486 + H281DRAFT_06027 0.33 +2.4 32,487 - H281DRAFT_06027 0.33 +1.7 32,652 - H281DRAFT_06027 0.44 +1.5 32,720 + H281DRAFT_06027 0.49 +1.5 32,720 + H281DRAFT_06027 0.49 +0.9 32,721 - H281DRAFT_06027 0.49 +1.3 32,794 - H281DRAFT_06027 0.53 +1.2 32,794 - H281DRAFT_06027 0.53 +1.6 32,837 + H281DRAFT_06027 0.56 +2.2 32,846 + H281DRAFT_06027 0.57 +1.1 32,847 - H281DRAFT_06027 0.57 +0.9 32,864 + H281DRAFT_06027 0.58 +0.4 32,865 - H281DRAFT_06027 0.58 +2.6 32,865 - H281DRAFT_06027 0.58 -0.1 32,865 - H281DRAFT_06027 0.58 +1.1 32,865 - H281DRAFT_06027 0.58 +1.2 32,897 + H281DRAFT_06027 0.60 +0.8
Or see this region's nucleotide sequence