Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06022 and H281DRAFT_06023 are separated by 88 nucleotides H281DRAFT_06023 and H281DRAFT_06024 are separated by 39 nucleotides
H281DRAFT_06022: H281DRAFT_06022 - DNA polymerase I, at 26,253 to 28,994
_06022
H281DRAFT_06023: H281DRAFT_06023 - hypothetical protein, at 29,083 to 29,739
_06023
H281DRAFT_06024: H281DRAFT_06024 - transcriptional regulator, LysR family, at 29,779 to 30,711
_06024
Position (kb) 29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 28.995 kb on + strand at 29.094 kb on + strand at 29.095 kb on - strand at 29.155 kb on + strand, within H281DRAFT_06023 at 29.155 kb on + strand, within H281DRAFT_06023 at 29.188 kb on + strand, within H281DRAFT_06023 at 29.192 kb on - strand, within H281DRAFT_06023 at 29.192 kb on - strand at 29.407 kb on - strand, within H281DRAFT_06023 at 29.481 kb on - strand, within H281DRAFT_06023 at 29.481 kb on - strand, within H281DRAFT_06023 at 29.481 kb on - strand, within H281DRAFT_06023 at 29.672 kb on - strand, within H281DRAFT_06023 at 29.731 kb on + strand at 29.732 kb on - strand at 29.738 kb on - strand at 29.738 kb on - strand at 30.025 kb on + strand, within H281DRAFT_06024 at 30.026 kb on - strand, within H281DRAFT_06024 at 30.026 kb on - strand, within H281DRAFT_06024 at 30.026 kb on - strand, within H281DRAFT_06024 at 30.048 kb on - strand, within H281DRAFT_06024 at 30.048 kb on - strand, within H281DRAFT_06024 at 30.048 kb on - strand, within H281DRAFT_06024 at 30.452 kb on - strand, within H281DRAFT_06024 at 30.507 kb on - strand, within H281DRAFT_06024 at 30.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 28,995 + -0.2 29,094 + -3.1 29,095 - -3.9 29,155 + H281DRAFT_06023 0.11 -1.5 29,155 + H281DRAFT_06023 0.11 -0.6 29,188 + H281DRAFT_06023 0.16 -1.9 29,192 - H281DRAFT_06023 0.17 -2.7 29,192 - +1.6 29,407 - H281DRAFT_06023 0.49 -0.2 29,481 - H281DRAFT_06023 0.61 -2.2 29,481 - H281DRAFT_06023 0.61 -2.2 29,481 - H281DRAFT_06023 0.61 -3.1 29,672 - H281DRAFT_06023 0.90 +0.2 29,731 + -0.4 29,732 - +0.1 29,738 - +0.7 29,738 - +0.3 30,025 + H281DRAFT_06024 0.26 +0.6 30,026 - H281DRAFT_06024 0.26 -0.0 30,026 - H281DRAFT_06024 0.26 +0.1 30,026 - H281DRAFT_06024 0.26 +0.9 30,048 - H281DRAFT_06024 0.29 +0.1 30,048 - H281DRAFT_06024 0.29 +0.4 30,048 - H281DRAFT_06024 0.29 +0.1 30,452 - H281DRAFT_06024 0.72 +0.1 30,507 - H281DRAFT_06024 0.78 +0.4 30,723 + +0.4
Or see this region's nucleotide sequence