Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05953 and H281DRAFT_05954 are separated by 2 nucleotides H281DRAFT_05954 and H281DRAFT_05955 are separated by 12 nucleotides
H281DRAFT_05953: H281DRAFT_05953 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 93,233 to 94,165
_05953
H281DRAFT_05954: H281DRAFT_05954 - Sugar phosphate permease, at 94,168 to 95,490
_05954
H281DRAFT_05955: H281DRAFT_05955 - Predicted arabinose efflux permease, MFS family, at 95,503 to 96,741
_05955
Position (kb) 94
95
96 Strain fitness (log2 ratio) -1
0
1
2 at 93.256 kb on + strand at 93.574 kb on + strand, within H281DRAFT_05953 at 93.658 kb on + strand, within H281DRAFT_05953 at 93.877 kb on - strand, within H281DRAFT_05953 at 94.003 kb on - strand, within H281DRAFT_05953 at 94.314 kb on - strand, within H281DRAFT_05954 at 94.390 kb on - strand, within H281DRAFT_05954 at 94.541 kb on - strand, within H281DRAFT_05954 at 94.541 kb on - strand, within H281DRAFT_05954 at 94.590 kb on - strand, within H281DRAFT_05954 at 94.748 kb on + strand, within H281DRAFT_05954 at 95.150 kb on + strand, within H281DRAFT_05954 at 95.167 kb on - strand, within H281DRAFT_05954 at 95.206 kb on - strand, within H281DRAFT_05954 at 95.240 kb on + strand, within H281DRAFT_05954 at 95.282 kb on + strand, within H281DRAFT_05954 at 95.676 kb on - strand, within H281DRAFT_05955 at 95.676 kb on - strand, within H281DRAFT_05955 at 96.008 kb on + strand, within H281DRAFT_05955 at 96.081 kb on - strand, within H281DRAFT_05955 at 96.266 kb on + strand, within H281DRAFT_05955 at 96.267 kb on - strand, within H281DRAFT_05955
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 93,256 + -0.1 93,574 + H281DRAFT_05953 0.37 -1.0 93,658 + H281DRAFT_05953 0.46 -1.2 93,877 - H281DRAFT_05953 0.69 +0.1 94,003 - H281DRAFT_05953 0.83 +0.2 94,314 - H281DRAFT_05954 0.11 -0.6 94,390 - H281DRAFT_05954 0.17 -0.5 94,541 - H281DRAFT_05954 0.28 +0.4 94,541 - H281DRAFT_05954 0.28 -0.3 94,590 - H281DRAFT_05954 0.32 -0.4 94,748 + H281DRAFT_05954 0.44 +0.3 95,150 + H281DRAFT_05954 0.74 -0.4 95,167 - H281DRAFT_05954 0.76 -0.8 95,206 - H281DRAFT_05954 0.78 +0.2 95,240 + H281DRAFT_05954 0.81 -0.4 95,282 + H281DRAFT_05954 0.84 +0.2 95,676 - H281DRAFT_05955 0.14 +2.1 95,676 - H281DRAFT_05955 0.14 +0.1 96,008 + H281DRAFT_05955 0.41 +2.1 96,081 - H281DRAFT_05955 0.47 -0.3 96,266 + H281DRAFT_05955 0.62 -0.9 96,267 - H281DRAFT_05955 0.62 +0.2
Or see this region's nucleotide sequence