Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05944 and H281DRAFT_05945 are separated by 393 nucleotides H281DRAFT_05945 and H281DRAFT_05946 are separated by 40 nucleotides
H281DRAFT_05944: H281DRAFT_05944 - DNA-binding transcriptional regulator, FadR family, at 83,673 to 84,374
_05944
H281DRAFT_05945: H281DRAFT_05945 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 84,768 to 85,805
_05945
H281DRAFT_05946: H281DRAFT_05946 - monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-), at 85,846 to 87,330
_05946
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1 at 83.846 kb on + strand, within H281DRAFT_05944 at 84.281 kb on - strand, within H281DRAFT_05944 at 84.285 kb on - strand, within H281DRAFT_05944 at 84.329 kb on - strand at 84.432 kb on - strand at 84.861 kb on - strand at 84.993 kb on - strand, within H281DRAFT_05945 at 84.993 kb on - strand, within H281DRAFT_05945 at 85.225 kb on - strand, within H281DRAFT_05945 at 85.531 kb on - strand, within H281DRAFT_05945 at 85.905 kb on + strand at 85.905 kb on + strand at 85.944 kb on - strand at 86.481 kb on + strand, within H281DRAFT_05946 at 86.482 kb on - strand at 86.673 kb on - strand, within H281DRAFT_05946 at 86.782 kb on + strand, within H281DRAFT_05946 at 86.783 kb on - strand, within H281DRAFT_05946 at 86.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 83,846 + H281DRAFT_05944 0.25 +0.1 84,281 - H281DRAFT_05944 0.87 -0.4 84,285 - H281DRAFT_05944 0.87 +0.3 84,329 - -0.2 84,432 - +0.4 84,861 - -0.7 84,993 - H281DRAFT_05945 0.22 -0.4 84,993 - H281DRAFT_05945 0.22 -1.1 85,225 - H281DRAFT_05945 0.44 +0.3 85,531 - H281DRAFT_05945 0.74 -1.6 85,905 + -0.1 85,905 + +0.6 85,944 - -0.2 86,481 + H281DRAFT_05946 0.43 +0.3 86,482 - +0.8 86,673 - H281DRAFT_05946 0.56 -0.8 86,782 + H281DRAFT_05946 0.63 +0.8 86,783 - H281DRAFT_05946 0.63 -0.9 86,783 - -1.4
Or see this region's nucleotide sequence