Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05907 and H281DRAFT_05908 are separated by 258 nucleotides H281DRAFT_05908 and H281DRAFT_05909 are separated by 134 nucleotides H281DRAFT_05909 and H281DRAFT_05910 are separated by 311 nucleotides H281DRAFT_05910 and H281DRAFT_05911 are separated by 24 nucleotides
H281DRAFT_05907: H281DRAFT_05907 - DNA-binding protein H-NS, at 43,210 to 43,557
_05907
H281DRAFT_05908: H281DRAFT_05908 - hypothetical protein, at 43,816 to 44,037
_05908
H281DRAFT_05909: H281DRAFT_05909 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 44,172 to 44,567
_05909
H281DRAFT_05910: H281DRAFT_05910 - hypothetical protein, at 44,879 to 45,388
_05910
H281DRAFT_05911: H281DRAFT_05911 - hypothetical protein, at 45,413 to 45,727
_05911
Position (kb) 44
45 Strain fitness (log2 ratio) -1
0
1 at 43.574 kb on + strand at 43.575 kb on - strand at 43.575 kb on - strand at 43.920 kb on - strand, within H281DRAFT_05908 at 43.999 kb on + strand, within H281DRAFT_05908 at 44.042 kb on - strand at 44.046 kb on - strand at 44.066 kb on + strand at 44.067 kb on - strand at 44.281 kb on + strand, within H281DRAFT_05909 at 44.381 kb on + strand, within H281DRAFT_05909 at 44.382 kb on - strand, within H281DRAFT_05909 at 44.557 kb on - strand at 44.625 kb on - strand at 44.639 kb on - strand at 44.639 kb on - strand at 44.657 kb on - strand at 44.803 kb on - strand at 44.844 kb on + strand at 44.845 kb on - strand at 45.194 kb on + strand, within H281DRAFT_05910 at 45.448 kb on + strand, within H281DRAFT_05911 at 45.472 kb on + strand, within H281DRAFT_05911 at 45.496 kb on + strand, within H281DRAFT_05911 at 45.497 kb on - strand, within H281DRAFT_05911 at 45.497 kb on - strand, within H281DRAFT_05911 at 45.521 kb on + strand, within H281DRAFT_05911
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 43,574 + -1.4 43,575 - -0.7 43,575 - -0.3 43,920 - H281DRAFT_05908 0.47 +1.4 43,999 + H281DRAFT_05908 0.82 +0.1 44,042 - +0.5 44,046 - -0.4 44,066 + +0.9 44,067 - +0.1 44,281 + H281DRAFT_05909 0.28 +0.4 44,381 + H281DRAFT_05909 0.53 +0.6 44,382 - H281DRAFT_05909 0.53 +0.7 44,557 - +1.3 44,625 - +0.3 44,639 - -0.8 44,639 - -0.9 44,657 - +0.2 44,803 - +0.7 44,844 + +0.2 44,845 - -0.1 45,194 + H281DRAFT_05910 0.62 -0.3 45,448 + H281DRAFT_05911 0.11 +0.3 45,472 + H281DRAFT_05911 0.19 -1.4 45,496 + H281DRAFT_05911 0.26 -1.2 45,497 - H281DRAFT_05911 0.27 -1.0 45,497 - H281DRAFT_05911 0.27 +0.1 45,521 + H281DRAFT_05911 0.34 +0.1
Or see this region's nucleotide sequence