Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05496

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05495 and H281DRAFT_05496 are separated by 53 nucleotidesH281DRAFT_05496 and H281DRAFT_05497 are separated by 31 nucleotidesH281DRAFT_05497 and H281DRAFT_05498 overlap by 10 nucleotides H281DRAFT_05495: H281DRAFT_05495 - putative spermidine/putrescine transport system substrate-binding protein, at 74,730 to 75,770 _05495 H281DRAFT_05496: H281DRAFT_05496 - Acetoin utilization deacetylase AcuC, at 75,824 to 76,849 _05496 H281DRAFT_05497: H281DRAFT_05497 - 3-oxoacyl-[acyl-carrier protein] reductase, at 76,881 to 77,621 _05497 H281DRAFT_05498: H281DRAFT_05498 - branched chain amino acid aminotransferase apoenzyme (EC 2.6.1.42), at 77,612 to 78,538 _05498 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.942 kb on + strand, within H281DRAFT_05495at 74.942 kb on + strand, within H281DRAFT_05495at 74.942 kb on + strand, within H281DRAFT_05495at 74.942 kb on + strand, within H281DRAFT_05495at 74.942 kb on + strand, within H281DRAFT_05495at 74.942 kb on + strand, within H281DRAFT_05495at 74.943 kb on - strand, within H281DRAFT_05495at 74.943 kb on - strand, within H281DRAFT_05495at 74.943 kb on - strand, within H281DRAFT_05495at 74.943 kb on - strand, within H281DRAFT_05495at 74.943 kb on - strand, within H281DRAFT_05495at 74.943 kb on - strand, within H281DRAFT_05495at 74.944 kb on + strand, within H281DRAFT_05495at 74.944 kb on + strand, within H281DRAFT_05495at 74.945 kb on - strand, within H281DRAFT_05495at 75.060 kb on - strand, within H281DRAFT_05495at 75.082 kb on + strand, within H281DRAFT_05495at 75.083 kb on - strand, within H281DRAFT_05495at 75.155 kb on + strand, within H281DRAFT_05495at 75.158 kb on - strand, within H281DRAFT_05495at 75.158 kb on - strand, within H281DRAFT_05495at 75.158 kb on - strand, within H281DRAFT_05495at 75.221 kb on + strand, within H281DRAFT_05495at 75.221 kb on + strand, within H281DRAFT_05495at 75.222 kb on - strand, within H281DRAFT_05495at 75.224 kb on - strand, within H281DRAFT_05495at 75.393 kb on + strand, within H281DRAFT_05495at 75.549 kb on - strand, within H281DRAFT_05495at 75.549 kb on - strand, within H281DRAFT_05495at 75.549 kb on - strand, within H281DRAFT_05495at 75.706 kb on + strandat 75.707 kb on - strandat 75.707 kb on - strandat 75.707 kb on - strandat 75.882 kb on + strandat 75.883 kb on - strandat 76.078 kb on - strand, within H281DRAFT_05496at 76.078 kb on - strand, within H281DRAFT_05496at 76.122 kb on + strand, within H281DRAFT_05496at 76.159 kb on - strand, within H281DRAFT_05496at 76.171 kb on - strand, within H281DRAFT_05496at 76.179 kb on + strand, within H281DRAFT_05496at 76.179 kb on + strand, within H281DRAFT_05496at 76.214 kb on + strand, within H281DRAFT_05496at 76.231 kb on - strand, within H281DRAFT_05496at 76.231 kb on - strand, within H281DRAFT_05496at 76.308 kb on + strand, within H281DRAFT_05496at 76.339 kb on - strand, within H281DRAFT_05496at 76.365 kb on + strand, within H281DRAFT_05496at 76.473 kb on + strand, within H281DRAFT_05496at 76.473 kb on + strand, within H281DRAFT_05496at 76.473 kb on + strand, within H281DRAFT_05496at 76.474 kb on - strand, within H281DRAFT_05496at 76.474 kb on - strand, within H281DRAFT_05496at 76.474 kb on - strand, within H281DRAFT_05496at 76.474 kb on - strand, within H281DRAFT_05496at 76.474 kb on - strand, within H281DRAFT_05496at 76.474 kb on - strand, within H281DRAFT_05496at 76.565 kb on + strand, within H281DRAFT_05496at 76.566 kb on - strand, within H281DRAFT_05496at 76.627 kb on - strand, within H281DRAFT_05496at 76.627 kb on - strand, within H281DRAFT_05496at 76.646 kb on + strand, within H281DRAFT_05496at 76.646 kb on + strand, within H281DRAFT_05496at 76.646 kb on + strand, within H281DRAFT_05496at 76.647 kb on - strand, within H281DRAFT_05496at 76.647 kb on - strand, within H281DRAFT_05496at 76.650 kb on + strand, within H281DRAFT_05496at 76.660 kb on + strand, within H281DRAFT_05496at 76.936 kb on - strandat 76.955 kb on - strand, within H281DRAFT_05497at 76.995 kb on + strand, within H281DRAFT_05497at 77.070 kb on + strand, within H281DRAFT_05497at 77.070 kb on + strand, within H281DRAFT_05497at 77.071 kb on - strand, within H281DRAFT_05497at 77.138 kb on - strand, within H281DRAFT_05497at 77.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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74,942 + H281DRAFT_05495 0.20 +0.1
74,942 + H281DRAFT_05495 0.20 -0.3
74,942 + H281DRAFT_05495 0.20 +1.2
74,942 + H281DRAFT_05495 0.20 +0.5
74,942 + H281DRAFT_05495 0.20 +0.1
74,942 + H281DRAFT_05495 0.20 -2.3
74,943 - H281DRAFT_05495 0.20 -0.6
74,943 - H281DRAFT_05495 0.20 -0.3
74,943 - H281DRAFT_05495 0.20 +1.7
74,943 - H281DRAFT_05495 0.20 +0.1
74,943 - H281DRAFT_05495 0.20 -1.3
74,943 - H281DRAFT_05495 0.20 -0.8
74,944 + H281DRAFT_05495 0.21 +0.9
74,944 + H281DRAFT_05495 0.21 +0.0
74,945 - H281DRAFT_05495 0.21 +1.0
75,060 - H281DRAFT_05495 0.32 +0.6
75,082 + H281DRAFT_05495 0.34 -0.3
75,083 - H281DRAFT_05495 0.34 -0.4
75,155 + H281DRAFT_05495 0.41 -0.4
75,158 - H281DRAFT_05495 0.41 -1.3
75,158 - H281DRAFT_05495 0.41 +1.5
75,158 - H281DRAFT_05495 0.41 +1.5
75,221 + H281DRAFT_05495 0.47 +0.3
75,221 + H281DRAFT_05495 0.47 -1.2
75,222 - H281DRAFT_05495 0.47 +1.7
75,224 - H281DRAFT_05495 0.47 +0.3
75,393 + H281DRAFT_05495 0.64 -0.0
75,549 - H281DRAFT_05495 0.79 +0.5
75,549 - H281DRAFT_05495 0.79 +0.5
75,549 - H281DRAFT_05495 0.79 +1.0
75,706 + +1.2
75,707 - -0.8
75,707 - -1.2
75,707 - +0.5
75,882 + -0.2
75,883 - -0.8
76,078 - H281DRAFT_05496 0.25 -0.6
76,078 - H281DRAFT_05496 0.25 -0.0
76,122 + H281DRAFT_05496 0.29 -0.0
76,159 - H281DRAFT_05496 0.33 -1.6
76,171 - H281DRAFT_05496 0.34 +0.4
76,179 + H281DRAFT_05496 0.35 +0.6
76,179 + H281DRAFT_05496 0.35 -0.6
76,214 + H281DRAFT_05496 0.38 +0.2
76,231 - H281DRAFT_05496 0.40 +0.0
76,231 - H281DRAFT_05496 0.40 +0.2
76,308 + H281DRAFT_05496 0.47 -0.2
76,339 - H281DRAFT_05496 0.50 -1.9
76,365 + H281DRAFT_05496 0.53 +0.3
76,473 + H281DRAFT_05496 0.63 -0.3
76,473 + H281DRAFT_05496 0.63 -0.1
76,473 + H281DRAFT_05496 0.63 +0.7
76,474 - H281DRAFT_05496 0.63 +1.3
76,474 - H281DRAFT_05496 0.63 +0.2
76,474 - H281DRAFT_05496 0.63 -0.4
76,474 - H281DRAFT_05496 0.63 -0.2
76,474 - H281DRAFT_05496 0.63 +1.0
76,474 - H281DRAFT_05496 0.63 -0.2
76,565 + H281DRAFT_05496 0.72 +0.4
76,566 - H281DRAFT_05496 0.72 +0.3
76,627 - H281DRAFT_05496 0.78 +0.6
76,627 - H281DRAFT_05496 0.78 -0.6
76,646 + H281DRAFT_05496 0.80 +0.5
76,646 + H281DRAFT_05496 0.80 -0.6
76,646 + H281DRAFT_05496 0.80 +1.2
76,647 - H281DRAFT_05496 0.80 +0.0
76,647 - H281DRAFT_05496 0.80 +0.2
76,650 + H281DRAFT_05496 0.81 +2.0
76,660 + H281DRAFT_05496 0.81 +0.2
76,936 - -0.1
76,955 - H281DRAFT_05497 0.10 -0.2
76,995 + H281DRAFT_05497 0.15 -0.6
77,070 + H281DRAFT_05497 0.26 -0.3
77,070 + H281DRAFT_05497 0.26 -0.1
77,071 - H281DRAFT_05497 0.26 -0.1
77,138 - H281DRAFT_05497 0.35 -0.9
77,575 - +0.7

Or see this region's nucleotide sequence