Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05280 and H281DRAFT_05281 are separated by 5 nucleotides H281DRAFT_05281 and H281DRAFT_05282 overlap by 1 nucleotides H281DRAFT_05282 and H281DRAFT_05283 are separated by 8 nucleotides H281DRAFT_05283 and H281DRAFT_05284 are separated by 169 nucleotides
H281DRAFT_05280: H281DRAFT_05280 - malonate decarboxylase delta subunit, at 22,326 to 22,640
_05280
H281DRAFT_05281: H281DRAFT_05281 - triphosphoribosyl-dephospho-CoA synthase, at 22,646 to 23,608
_05281
H281DRAFT_05282: H281DRAFT_05282 - malonate decarboxylase alpha subunit, at 23,608 to 25,269
_05282
H281DRAFT_05283: H281DRAFT_05283 - transcriptional regulator, GntR family, at 25,278 to 26,051
_05283
H281DRAFT_05284: H281DRAFT_05284 - Predicted arabinose efflux permease, MFS family, at 26,221 to 27,519
_05284
Position (kb) 23
24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 23.029 kb on - strand, within H281DRAFT_05281 at 23.639 kb on + strand at 23.639 kb on + strand at 23.640 kb on - strand at 23.909 kb on + strand, within H281DRAFT_05282 at 23.909 kb on + strand, within H281DRAFT_05282 at 23.909 kb on + strand, within H281DRAFT_05282 at 23.910 kb on - strand, within H281DRAFT_05282 at 24.002 kb on + strand, within H281DRAFT_05282 at 24.002 kb on + strand, within H281DRAFT_05282 at 24.002 kb on + strand, within H281DRAFT_05282 at 24.003 kb on - strand, within H281DRAFT_05282 at 24.287 kb on - strand, within H281DRAFT_05282 at 24.308 kb on + strand, within H281DRAFT_05282 at 24.308 kb on + strand, within H281DRAFT_05282 at 24.524 kb on + strand, within H281DRAFT_05282 at 24.860 kb on + strand, within H281DRAFT_05282 at 24.861 kb on - strand, within H281DRAFT_05282 at 25.489 kb on + strand, within H281DRAFT_05283 at 25.490 kb on - strand, within H281DRAFT_05283 at 25.490 kb on - strand, within H281DRAFT_05283 at 25.586 kb on - strand, within H281DRAFT_05283 at 25.621 kb on + strand, within H281DRAFT_05283 at 25.622 kb on - strand, within H281DRAFT_05283 at 25.622 kb on - strand, within H281DRAFT_05283 at 25.623 kb on + strand, within H281DRAFT_05283 at 25.624 kb on - strand, within H281DRAFT_05283 at 25.748 kb on - strand, within H281DRAFT_05283 at 25.932 kb on - strand, within H281DRAFT_05283 at 25.959 kb on + strand, within H281DRAFT_05283 at 26.061 kb on - strand at 26.190 kb on + strand at 26.190 kb on + strand at 26.191 kb on - strand at 26.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 23,029 - H281DRAFT_05281 0.40 -0.9 23,639 + +0.5 23,639 + -0.6 23,640 - -0.3 23,909 + H281DRAFT_05282 0.18 +0.6 23,909 + H281DRAFT_05282 0.18 +0.8 23,909 + H281DRAFT_05282 0.18 -0.5 23,910 - H281DRAFT_05282 0.18 -0.4 24,002 + H281DRAFT_05282 0.24 -0.5 24,002 + H281DRAFT_05282 0.24 -1.7 24,002 + H281DRAFT_05282 0.24 -0.4 24,003 - H281DRAFT_05282 0.24 -0.4 24,287 - H281DRAFT_05282 0.41 -1.6 24,308 + H281DRAFT_05282 0.42 -1.0 24,308 + H281DRAFT_05282 0.42 +1.9 24,524 + H281DRAFT_05282 0.55 -0.3 24,860 + H281DRAFT_05282 0.75 -0.7 24,861 - H281DRAFT_05282 0.75 -0.7 25,489 + H281DRAFT_05283 0.27 -1.3 25,490 - H281DRAFT_05283 0.27 -0.7 25,490 - H281DRAFT_05283 0.27 -2.9 25,586 - H281DRAFT_05283 0.40 -0.0 25,621 + H281DRAFT_05283 0.44 -0.1 25,622 - H281DRAFT_05283 0.44 +0.8 25,622 - H281DRAFT_05283 0.44 -1.3 25,623 + H281DRAFT_05283 0.45 +1.0 25,624 - H281DRAFT_05283 0.45 +0.3 25,748 - H281DRAFT_05283 0.61 -0.7 25,932 - H281DRAFT_05283 0.84 +0.2 25,959 + H281DRAFT_05283 0.88 +1.0 26,061 - +1.0 26,190 + +0.1 26,190 + -0.5 26,191 - -0.5 26,191 - -0.9
Or see this region's nucleotide sequence