Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05178 and H281DRAFT_05179 are separated by 293 nucleotides H281DRAFT_05179 and H281DRAFT_05180 are separated by 562 nucleotides
H281DRAFT_05178: H281DRAFT_05178 - Outer membrane phospholipase A, at 132,296 to 133,645
_05178
H281DRAFT_05179: H281DRAFT_05179 - manganese transport protein, at 133,939 to 135,234
_05179
H281DRAFT_05180: H281DRAFT_05180 - putrescine transport system substrate-binding protein, at 135,797 to 136,897
_05180
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.978 kb on + strand, within H281DRAFT_05178 at 132.978 kb on + strand, within H281DRAFT_05178 at 132.978 kb on + strand, within H281DRAFT_05178 at 132.979 kb on - strand, within H281DRAFT_05178 at 132.993 kb on + strand, within H281DRAFT_05178 at 133.172 kb on + strand, within H281DRAFT_05178 at 133.268 kb on - strand, within H281DRAFT_05178 at 133.432 kb on - strand, within H281DRAFT_05178 at 133.865 kb on + strand at 133.865 kb on + strand at 133.877 kb on + strand at 133.954 kb on + strand at 133.954 kb on + strand at 133.954 kb on + strand at 134.024 kb on - strand at 134.159 kb on + strand, within H281DRAFT_05179 at 134.570 kb on + strand, within H281DRAFT_05179 at 134.571 kb on - strand, within H281DRAFT_05179 at 134.849 kb on - strand, within H281DRAFT_05179 at 134.849 kb on - strand, within H281DRAFT_05179 at 135.075 kb on - strand, within H281DRAFT_05179 at 135.529 kb on + strand at 135.595 kb on - strand at 135.634 kb on + strand at 135.635 kb on - strand at 135.684 kb on + strand at 135.694 kb on + strand at 135.695 kb on - strand at 135.891 kb on - strand at 135.891 kb on - strand at 135.891 kb on - strand at 135.891 kb on - strand at 135.893 kb on - strand at 135.893 kb on - strand at 135.893 kb on - strand at 135.906 kb on - strand at 135.906 kb on - strand at 135.972 kb on - strand, within H281DRAFT_05180 at 135.972 kb on - strand, within H281DRAFT_05180 at 136.049 kb on + strand, within H281DRAFT_05180 at 136.118 kb on + strand, within H281DRAFT_05180 at 136.118 kb on + strand, within H281DRAFT_05180 at 136.190 kb on + strand, within H281DRAFT_05180 at 136.211 kb on + strand, within H281DRAFT_05180
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 132,978 + H281DRAFT_05178 0.51 +0.2 132,978 + H281DRAFT_05178 0.51 -0.1 132,978 + H281DRAFT_05178 0.51 +0.1 132,979 - H281DRAFT_05178 0.51 -0.2 132,993 + H281DRAFT_05178 0.52 +0.4 133,172 + H281DRAFT_05178 0.65 +0.1 133,268 - H281DRAFT_05178 0.72 +0.3 133,432 - H281DRAFT_05178 0.84 -0.7 133,865 + +1.3 133,865 + +0.9 133,877 + +0.1 133,954 + +0.3 133,954 + +0.6 133,954 + +0.4 134,024 - +0.2 134,159 + H281DRAFT_05179 0.17 +1.3 134,570 + H281DRAFT_05179 0.49 +1.8 134,571 - H281DRAFT_05179 0.49 +0.7 134,849 - H281DRAFT_05179 0.70 -0.3 134,849 - H281DRAFT_05179 0.70 +1.1 135,075 - H281DRAFT_05179 0.88 +0.7 135,529 + -1.9 135,595 - +0.4 135,634 + +0.1 135,635 - +1.4 135,684 + -0.8 135,694 + +0.1 135,695 - +0.3 135,891 - -0.6 135,891 - +0.1 135,891 - +0.3 135,891 - +1.1 135,893 - +0.2 135,893 - +0.4 135,893 - +0.8 135,906 - -0.6 135,906 - +0.2 135,972 - H281DRAFT_05180 0.16 +0.8 135,972 - H281DRAFT_05180 0.16 +1.6 136,049 + H281DRAFT_05180 0.23 +0.9 136,118 + H281DRAFT_05180 0.29 +0.7 136,118 + H281DRAFT_05180 0.29 +0.1 136,190 + H281DRAFT_05180 0.36 -0.7 136,211 + H281DRAFT_05180 0.38 +0.6
Or see this region's nucleotide sequence