Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05119 and H281DRAFT_05120 are separated by 156 nucleotides H281DRAFT_05120 and H281DRAFT_05121 are separated by 327 nucleotides H281DRAFT_05121 and H281DRAFT_05122 are separated by 29 nucleotides H281DRAFT_05122 and H281DRAFT_05123 are separated by 630 nucleotides H281DRAFT_05123 and H281DRAFT_05124 are separated by 14 nucleotides
H281DRAFT_05119: H281DRAFT_05119 - Protein of unknown function (DUF2968), at 70,032 to 70,772
_05119
H281DRAFT_05120: H281DRAFT_05120 - hypothetical protein, at 70,929 to 71,123
_05120
H281DRAFT_05121: H281DRAFT_05121 - hypothetical protein, at 71,451 to 71,675
_05121
H281DRAFT_05122: H281DRAFT_05122 - host factor-I protein, at 71,705 to 72,172
_05122
H281DRAFT_05123: H281DRAFT_05123 - hypothetical protein, at 72,803 to 72,940
_05123
H281DRAFT_05124: H281DRAFT_05124 - RNA polymerase sigma-70 factor, ECF subfamily, at 72,955 to 73,482
_05124
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.899 kb on + strand at 70.900 kb on - strand at 71.052 kb on - strand at 71.197 kb on + strand at 71.200 kb on - strand at 71.200 kb on - strand at 71.636 kb on - strand, within H281DRAFT_05121 at 71.707 kb on - strand at 71.850 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.004 kb on - strand, within H281DRAFT_05122 at 72.004 kb on - strand, within H281DRAFT_05122 at 72.096 kb on + strand, within H281DRAFT_05122 at 72.186 kb on + strand at 72.259 kb on + strand at 72.260 kb on - strand at 72.260 kb on - strand at 72.279 kb on + strand at 72.279 kb on + strand at 72.280 kb on - strand at 72.291 kb on - strand at 72.295 kb on - strand at 72.413 kb on + strand at 72.414 kb on - strand at 72.414 kb on - strand at 72.451 kb on + strand at 72.451 kb on + strand at 72.532 kb on - strand at 72.581 kb on - strand at 72.727 kb on + strand at 72.727 kb on + strand at 72.727 kb on + strand at 72.728 kb on - strand at 72.761 kb on + strand at 72.761 kb on + strand at 72.777 kb on - strand at 72.777 kb on - strand at 72.777 kb on - strand at 72.802 kb on + strand at 72.834 kb on + strand, within H281DRAFT_05123 at 72.922 kb on + strand, within H281DRAFT_05123 at 73.105 kb on - strand, within H281DRAFT_05124 at 73.144 kb on + strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 70,899 + -0.5 70,900 - -1.4 71,052 - +0.2 71,197 + +0.2 71,200 - +0.5 71,200 - -0.2 71,636 - H281DRAFT_05121 0.82 +0.3 71,707 - -0.7 71,850 + H281DRAFT_05122 0.31 +0.6 72,003 + H281DRAFT_05122 0.64 +0.2 72,003 + H281DRAFT_05122 0.64 +0.5 72,003 + H281DRAFT_05122 0.64 +2.1 72,003 + H281DRAFT_05122 0.64 +0.3 72,004 - H281DRAFT_05122 0.64 -0.0 72,004 - H281DRAFT_05122 0.64 +1.2 72,096 + H281DRAFT_05122 0.84 +0.7 72,186 + -0.6 72,259 + -0.3 72,260 - +0.6 72,260 - -0.3 72,279 + -0.8 72,279 + +1.5 72,280 - -0.7 72,291 - -0.7 72,295 - -0.8 72,413 + +2.0 72,414 - +0.2 72,414 - +0.4 72,451 + -1.8 72,451 + +0.0 72,532 - -0.5 72,581 - -0.4 72,727 + +0.4 72,727 + +0.5 72,727 + +0.6 72,728 - -1.1 72,761 + +0.6 72,761 + +0.0 72,777 - -0.4 72,777 - -0.3 72,777 - +0.1 72,802 + +0.3 72,834 + H281DRAFT_05123 0.22 -0.1 72,922 + H281DRAFT_05123 0.86 -0.3 73,105 - H281DRAFT_05124 0.28 -0.2 73,144 + H281DRAFT_05124 0.36 +0.1 73,145 - H281DRAFT_05124 0.36 +0.9 73,145 - H281DRAFT_05124 0.36 +0.6 73,145 - H281DRAFT_05124 0.36 -1.7 73,145 - H281DRAFT_05124 0.36 -0.2
Or see this region's nucleotide sequence