Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05109 and H281DRAFT_05110 are separated by 49 nucleotides H281DRAFT_05110 and H281DRAFT_05111 are separated by 347 nucleotides
H281DRAFT_05109: H281DRAFT_05109 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 56,082 to 57,650
_05109
H281DRAFT_05110: H281DRAFT_05110 - transcriptional regulator, MarR family, at 57,700 to 58,215
_05110
H281DRAFT_05111: H281DRAFT_05111 - GTP-binding protein, at 58,563 to 60,389
_05111
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.748 kb on - strand, within H281DRAFT_05109 at 56.801 kb on + strand, within H281DRAFT_05109 at 56.802 kb on - strand, within H281DRAFT_05109 at 56.879 kb on - strand, within H281DRAFT_05109 at 56.936 kb on + strand, within H281DRAFT_05109 at 57.058 kb on + strand, within H281DRAFT_05109 at 57.058 kb on + strand, within H281DRAFT_05109 at 57.059 kb on - strand, within H281DRAFT_05109 at 57.078 kb on - strand, within H281DRAFT_05109 at 57.079 kb on + strand, within H281DRAFT_05109 at 57.080 kb on - strand, within H281DRAFT_05109 at 57.080 kb on - strand, within H281DRAFT_05109 at 57.080 kb on - strand, within H281DRAFT_05109 at 57.195 kb on + strand at 57.196 kb on - strand at 57.196 kb on - strand, within H281DRAFT_05109 at 57.234 kb on - strand, within H281DRAFT_05109 at 57.235 kb on + strand, within H281DRAFT_05109 at 57.236 kb on - strand, within H281DRAFT_05109 at 57.236 kb on - strand, within H281DRAFT_05109 at 57.301 kb on + strand, within H281DRAFT_05109 at 57.302 kb on - strand, within H281DRAFT_05109 at 57.302 kb on - strand, within H281DRAFT_05109 at 57.302 kb on - strand, within H281DRAFT_05109 at 57.349 kb on + strand, within H281DRAFT_05109 at 57.511 kb on + strand at 57.511 kb on + strand at 57.511 kb on + strand at 57.511 kb on + strand at 57.512 kb on - strand at 57.512 kb on - strand at 57.556 kb on + strand at 57.556 kb on + strand at 57.838 kb on + strand, within H281DRAFT_05110 at 57.839 kb on - strand, within H281DRAFT_05110 at 58.149 kb on - strand, within H281DRAFT_05110 at 58.254 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.359 kb on + strand at 58.359 kb on + strand at 58.359 kb on + strand at 58.360 kb on - strand at 58.372 kb on + strand at 58.373 kb on - strand at 58.373 kb on - strand at 58.373 kb on - strand at 58.405 kb on + strand at 58.406 kb on - strand at 58.415 kb on + strand at 58.415 kb on + strand at 58.441 kb on + strand at 58.507 kb on + strand at 58.508 kb on - strand at 58.562 kb on + strand at 58.562 kb on + strand at 58.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 56,748 - H281DRAFT_05109 0.42 -0.4 56,801 + H281DRAFT_05109 0.46 +0.5 56,802 - H281DRAFT_05109 0.46 -0.1 56,879 - H281DRAFT_05109 0.51 +0.2 56,936 + H281DRAFT_05109 0.54 +0.2 57,058 + H281DRAFT_05109 0.62 +1.1 57,058 + H281DRAFT_05109 0.62 +0.9 57,059 - H281DRAFT_05109 0.62 +1.2 57,078 - H281DRAFT_05109 0.63 +0.1 57,079 + H281DRAFT_05109 0.64 +0.8 57,080 - H281DRAFT_05109 0.64 -0.1 57,080 - H281DRAFT_05109 0.64 +0.6 57,080 - H281DRAFT_05109 0.64 +0.4 57,195 + -1.4 57,196 - +1.1 57,196 - H281DRAFT_05109 0.71 -0.2 57,234 - H281DRAFT_05109 0.73 -0.3 57,235 + H281DRAFT_05109 0.73 -0.3 57,236 - H281DRAFT_05109 0.74 -0.5 57,236 - H281DRAFT_05109 0.74 -0.5 57,301 + H281DRAFT_05109 0.78 -0.8 57,302 - H281DRAFT_05109 0.78 +0.6 57,302 - H281DRAFT_05109 0.78 +0.5 57,302 - H281DRAFT_05109 0.78 +0.0 57,349 + H281DRAFT_05109 0.81 +0.4 57,511 + -1.4 57,511 + +0.1 57,511 + +0.2 57,511 + +0.5 57,512 - -0.3 57,512 - +0.6 57,556 + -0.8 57,556 + +0.5 57,838 + H281DRAFT_05110 0.27 +0.4 57,839 - H281DRAFT_05110 0.27 +0.1 58,149 - H281DRAFT_05110 0.87 +2.1 58,254 - -0.4 58,357 - -1.1 58,357 - +0.5 58,357 - +0.3 58,359 + -0.6 58,359 + -1.1 58,359 + +0.5 58,360 - -0.1 58,372 + +0.0 58,373 - -1.5 58,373 - +0.9 58,373 - -0.1 58,405 + -0.2 58,406 - -0.4 58,415 + +1.1 58,415 + +0.6 58,441 + +0.9 58,507 + -0.7 58,508 - +0.7 58,562 + +0.1 58,562 + -3.4 58,620 - -2.4
Or see this region's nucleotide sequence