Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05053 and H281DRAFT_05054 are separated by 115 nucleotides H281DRAFT_05054 and H281DRAFT_05055 are separated by 340 nucleotides H281DRAFT_05055 and H281DRAFT_05056 are separated by 370 nucleotides
H281DRAFT_05053: H281DRAFT_05053 - protein of unknown function (DUF3331), at 244,058 to 244,501
_05053
H281DRAFT_05054: H281DRAFT_05054 - Predicted periplasmic or secreted lipoprotein, at 244,617 to 245,000
_05054
H281DRAFT_05055: H281DRAFT_05055 - Signal transduction histidine kinase, at 245,341 to 246,396
_05055
H281DRAFT_05056: H281DRAFT_05056 - aldehyde dehydrogenase (NAD+), at 246,767 to 248,185
_05056
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.517 kb on - strand at 244.531 kb on + strand at 244.615 kb on + strand at 244.639 kb on - strand at 244.701 kb on - strand, within H281DRAFT_05054 at 244.939 kb on + strand, within H281DRAFT_05054 at 244.940 kb on - strand, within H281DRAFT_05054 at 245.041 kb on - strand at 245.042 kb on + strand at 245.043 kb on - strand at 245.075 kb on + strand at 245.076 kb on - strand at 245.076 kb on - strand at 245.076 kb on - strand at 245.095 kb on - strand at 245.097 kb on + strand at 245.145 kb on + strand at 245.499 kb on - strand, within H281DRAFT_05055 at 245.558 kb on - strand, within H281DRAFT_05055 at 245.953 kb on + strand, within H281DRAFT_05055 at 245.954 kb on - strand, within H281DRAFT_05055 at 246.086 kb on - strand, within H281DRAFT_05055 at 246.086 kb on - strand, within H281DRAFT_05055 at 246.242 kb on + strand, within H281DRAFT_05055 at 246.242 kb on + strand, within H281DRAFT_05055 at 246.486 kb on + strand at 246.502 kb on + strand at 246.503 kb on - strand at 246.606 kb on + strand at 246.606 kb on + strand at 246.606 kb on + strand at 246.607 kb on - strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.611 kb on - strand at 246.718 kb on + strand at 246.768 kb on + strand at 246.960 kb on + strand, within H281DRAFT_05056 at 246.960 kb on + strand, within H281DRAFT_05056 at 246.961 kb on - strand, within H281DRAFT_05056 at 246.975 kb on + strand, within H281DRAFT_05056 at 247.021 kb on - strand, within H281DRAFT_05056 at 247.082 kb on + strand, within H281DRAFT_05056 at 247.082 kb on + strand, within H281DRAFT_05056 at 247.082 kb on + strand, within H281DRAFT_05056 at 247.209 kb on + strand, within H281DRAFT_05056
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 244,517 - +0.2 244,531 + -0.3 244,615 + +0.5 244,639 - +2.0 244,701 - H281DRAFT_05054 0.22 +0.9 244,939 + H281DRAFT_05054 0.84 -1.1 244,940 - H281DRAFT_05054 0.84 -0.4 245,041 - -1.9 245,042 + +0.2 245,043 - +0.0 245,075 + -2.4 245,076 - +0.8 245,076 - -2.4 245,076 - +0.4 245,095 - +0.9 245,097 + +0.3 245,145 + +0.7 245,499 - H281DRAFT_05055 0.15 +0.3 245,558 - H281DRAFT_05055 0.21 +1.5 245,953 + H281DRAFT_05055 0.58 +1.0 245,954 - H281DRAFT_05055 0.58 +0.3 246,086 - H281DRAFT_05055 0.71 +0.2 246,086 - H281DRAFT_05055 0.71 +1.0 246,242 + H281DRAFT_05055 0.85 +0.3 246,242 + H281DRAFT_05055 0.85 -0.4 246,486 + -0.4 246,502 + -0.2 246,503 - +0.5 246,606 + +0.8 246,606 + +0.4 246,606 + +0.7 246,607 - -2.3 246,610 + -0.2 246,610 + +0.5 246,610 + -0.2 246,610 + -0.7 246,610 + +0.2 246,610 + -0.1 246,610 + -0.4 246,610 + +0.1 246,611 - -0.1 246,718 + -2.0 246,768 + -0.2 246,960 + H281DRAFT_05056 0.14 -2.3 246,960 + H281DRAFT_05056 0.14 +1.3 246,961 - H281DRAFT_05056 0.14 +0.0 246,975 + H281DRAFT_05056 0.15 -1.1 247,021 - H281DRAFT_05056 0.18 -1.1 247,082 + H281DRAFT_05056 0.22 +0.2 247,082 + H281DRAFT_05056 0.22 +1.1 247,082 + H281DRAFT_05056 0.22 +1.5 247,209 + H281DRAFT_05056 0.31 +0.2
Or see this region's nucleotide sequence