Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05012

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05009 and H281DRAFT_05010 overlap by 23 nucleotidesH281DRAFT_05010 and H281DRAFT_05011 are separated by 8 nucleotidesH281DRAFT_05011 and H281DRAFT_05012 overlap by 4 nucleotidesH281DRAFT_05012 and H281DRAFT_05013 are separated by 125 nucleotides H281DRAFT_05009: H281DRAFT_05009 - type III secretion protein Q, at 194,966 to 196,231 _05009 H281DRAFT_05010: H281DRAFT_05010 - type III secretion protein R, at 196,209 to 196,877 _05010 H281DRAFT_05011: H281DRAFT_05011 - type III secretion protein S, at 196,886 to 197,149 _05011 H281DRAFT_05012: H281DRAFT_05012 - hypothetical protein, at 197,146 to 198,138 _05012 H281DRAFT_05013: H281DRAFT_05013 - type III secretion protein D, at 198,264 to 199,556 _05013 Position (kb) 197 198 199Strain fitness (log2 ratio) -1 0 1at 196.710 kb on + strand, within H281DRAFT_05010at 196.711 kb on - strand, within H281DRAFT_05010at 196.870 kb on - strandat 197.267 kb on - strand, within H281DRAFT_05012at 197.668 kb on - strand, within H281DRAFT_05012at 198.290 kb on + strandat 198.418 kb on + strand, within H281DRAFT_05013at 198.418 kb on + strand, within H281DRAFT_05013at 198.460 kb on + strand, within H281DRAFT_05013at 198.583 kb on + strand, within H281DRAFT_05013

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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196,710 + H281DRAFT_05010 0.75 -0.8
196,711 - H281DRAFT_05010 0.75 -0.2
196,870 - +0.9
197,267 - H281DRAFT_05012 0.12 +0.4
197,668 - H281DRAFT_05012 0.53 +1.0
198,290 + +0.5
198,418 + H281DRAFT_05013 0.12 -1.1
198,418 + H281DRAFT_05013 0.12 -0.3
198,460 + H281DRAFT_05013 0.15 +0.0
198,583 + H281DRAFT_05013 0.25 +0.4

Or see this region's nucleotide sequence