Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04721 and H281DRAFT_04722 are separated by 10 nucleotides H281DRAFT_04722 and H281DRAFT_04723 are separated by 157 nucleotides H281DRAFT_04723 and H281DRAFT_04724 are separated by 59 nucleotides
H281DRAFT_04721: H281DRAFT_04721 - Cell division and transport-associated protein TolR, at 134,045 to 134,491
_04721
H281DRAFT_04722: H281DRAFT_04722 - Cell division and transport-associated protein TolQ, at 134,502 to 135,179
_04722
H281DRAFT_04723: H281DRAFT_04723 - (3S)-malyl-CoA thioesterase, at 135,337 to 135,816
_04723
H281DRAFT_04724: H281DRAFT_04724 - 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 135,876 to 136,622
_04724
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.415 kb on + strand, within H281DRAFT_04721 at 134.504 kb on - strand at 134.596 kb on + strand, within H281DRAFT_04722 at 134.596 kb on + strand, within H281DRAFT_04722 at 134.596 kb on + strand, within H281DRAFT_04722 at 134.597 kb on - strand at 134.597 kb on - strand, within H281DRAFT_04722 at 134.597 kb on - strand at 134.597 kb on - strand, within H281DRAFT_04722 at 134.753 kb on + strand, within H281DRAFT_04722 at 134.754 kb on - strand, within H281DRAFT_04722 at 134.755 kb on + strand, within H281DRAFT_04722 at 134.756 kb on - strand, within H281DRAFT_04722 at 134.975 kb on - strand at 134.975 kb on - strand at 135.170 kb on + strand at 135.171 kb on - strand at 135.192 kb on + strand at 135.436 kb on - strand, within H281DRAFT_04723 at 135.610 kb on - strand, within H281DRAFT_04723 at 135.701 kb on + strand, within H281DRAFT_04723 at 135.744 kb on - strand, within H281DRAFT_04723 at 135.744 kb on - strand, within H281DRAFT_04723 at 135.744 kb on - strand, within H281DRAFT_04723 at 135.746 kb on + strand, within H281DRAFT_04723 at 135.747 kb on - strand, within H281DRAFT_04723 at 135.801 kb on + strand at 135.801 kb on + strand at 135.802 kb on - strand at 135.802 kb on - strand at 135.973 kb on + strand, within H281DRAFT_04724 at 135.989 kb on + strand, within H281DRAFT_04724 at 136.060 kb on - strand, within H281DRAFT_04724 at 136.060 kb on - strand, within H281DRAFT_04724 at 136.184 kb on - strand, within H281DRAFT_04724 at 136.201 kb on + strand, within H281DRAFT_04724 at 136.201 kb on + strand, within H281DRAFT_04724 at 136.238 kb on + strand, within H281DRAFT_04724 at 136.238 kb on + strand, within H281DRAFT_04724 at 136.239 kb on - strand, within H281DRAFT_04724 at 136.471 kb on + strand, within H281DRAFT_04724 at 136.472 kb on - strand, within H281DRAFT_04724 at 136.624 kb on - strand at 136.624 kb on - strand at 136.641 kb on - strand at 136.641 kb on - strand at 136.641 kb on - strand at 136.663 kb on - strand at 136.690 kb on + strand at 136.691 kb on - strand at 136.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 134,415 + H281DRAFT_04721 0.83 -1.8 134,504 - +0.8 134,596 + H281DRAFT_04722 0.14 -2.2 134,596 + H281DRAFT_04722 0.14 -1.4 134,596 + H281DRAFT_04722 0.14 -2.9 134,597 - -0.8 134,597 - H281DRAFT_04722 0.14 -2.1 134,597 - -1.4 134,597 - H281DRAFT_04722 0.14 -1.8 134,753 + H281DRAFT_04722 0.37 -2.6 134,754 - H281DRAFT_04722 0.37 -0.8 134,755 + H281DRAFT_04722 0.37 +1.2 134,756 - H281DRAFT_04722 0.37 -1.8 134,975 - -0.1 134,975 - +1.8 135,170 + +0.4 135,171 - -1.8 135,192 + +0.1 135,436 - H281DRAFT_04723 0.21 -1.1 135,610 - H281DRAFT_04723 0.57 -0.6 135,701 + H281DRAFT_04723 0.76 +2.0 135,744 - H281DRAFT_04723 0.85 -0.9 135,744 - H281DRAFT_04723 0.85 -0.4 135,744 - H281DRAFT_04723 0.85 +1.0 135,746 + H281DRAFT_04723 0.85 +0.1 135,747 - H281DRAFT_04723 0.85 +0.8 135,801 + -1.0 135,801 + +0.2 135,802 - -0.4 135,802 - -0.3 135,973 + H281DRAFT_04724 0.13 -0.4 135,989 + H281DRAFT_04724 0.15 +0.4 136,060 - H281DRAFT_04724 0.25 +1.3 136,060 - H281DRAFT_04724 0.25 +0.3 136,184 - H281DRAFT_04724 0.41 +0.2 136,201 + H281DRAFT_04724 0.44 -0.5 136,201 + H281DRAFT_04724 0.44 -1.7 136,238 + H281DRAFT_04724 0.48 +0.3 136,238 + H281DRAFT_04724 0.48 +0.3 136,239 - H281DRAFT_04724 0.49 +0.1 136,471 + H281DRAFT_04724 0.80 -0.8 136,472 - H281DRAFT_04724 0.80 -0.1 136,624 - +0.7 136,624 - +0.5 136,641 - +0.8 136,641 - +0.5 136,641 - -2.1 136,663 - +0.5 136,690 + +0.3 136,691 - -1.2 136,691 - -0.3
Or see this region's nucleotide sequence