Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04472 and H281DRAFT_04473 are separated by 441 nucleotides H281DRAFT_04473 and H281DRAFT_04474 are separated by 69 nucleotides
H281DRAFT_04472: H281DRAFT_04472 - MFS transporter, FSR family, fosmidomycin resistance protein, at 200,234 to 201,517
_04472
H281DRAFT_04473: H281DRAFT_04473 - methyl-accepting chemotaxis protein, at 201,959 to 203,689
_04473
H281DRAFT_04474: H281DRAFT_04474 - RND family efflux transporter, MFP subunit, at 203,759 to 204,619
_04474
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -2
-1
0
1 at 201.213 kb on + strand, within H281DRAFT_04472 at 201.213 kb on + strand, within H281DRAFT_04472 at 201.214 kb on - strand, within H281DRAFT_04472 at 201.214 kb on - strand, within H281DRAFT_04472 at 201.214 kb on - strand, within H281DRAFT_04472 at 201.214 kb on - strand, within H281DRAFT_04472 at 201.255 kb on + strand, within H281DRAFT_04472 at 201.256 kb on - strand, within H281DRAFT_04472 at 201.318 kb on + strand, within H281DRAFT_04472 at 201.391 kb on - strand at 201.581 kb on + strand at 201.582 kb on - strand at 201.625 kb on + strand at 201.625 kb on + strand at 201.626 kb on - strand at 201.626 kb on - strand at 201.626 kb on - strand at 201.661 kb on - strand at 201.781 kb on - strand at 201.832 kb on + strand at 201.832 kb on + strand at 201.832 kb on + strand at 201.833 kb on - strand at 201.834 kb on + strand at 201.834 kb on + strand at 201.834 kb on + strand at 201.835 kb on - strand at 201.913 kb on - strand at 201.950 kb on + strand at 201.951 kb on - strand at 201.987 kb on + strand at 201.987 kb on + strand at 201.988 kb on - strand at 202.007 kb on - strand at 202.251 kb on - strand, within H281DRAFT_04473 at 202.808 kb on + strand, within H281DRAFT_04473 at 203.387 kb on - strand, within H281DRAFT_04473 at 203.694 kb on + strand at 203.695 kb on - strand at 203.788 kb on + strand at 203.788 kb on + strand at 203.788 kb on + strand at 203.928 kb on + strand, within H281DRAFT_04474 at 204.039 kb on + strand, within H281DRAFT_04474 at 204.039 kb on + strand, within H281DRAFT_04474 at 204.046 kb on - strand, within H281DRAFT_04474 at 204.046 kb on - strand, within H281DRAFT_04474 at 204.046 kb on - strand, within H281DRAFT_04474 at 204.136 kb on - strand, within H281DRAFT_04474 at 204.191 kb on + strand, within H281DRAFT_04474 at 204.378 kb on + strand at 204.531 kb on + strand, within H281DRAFT_04474 at 204.531 kb on + strand, within H281DRAFT_04474 at 204.531 kb on + strand, within H281DRAFT_04474 at 204.531 kb on + strand, within H281DRAFT_04474 at 204.532 kb on - strand, within H281DRAFT_04474 at 204.532 kb on - strand, within H281DRAFT_04474 at 204.532 kb on - strand, within H281DRAFT_04474 at 204.532 kb on - strand, within H281DRAFT_04474 at 204.578 kb on + strand at 204.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 201,213 + H281DRAFT_04472 0.76 -0.3 201,213 + H281DRAFT_04472 0.76 +0.5 201,214 - H281DRAFT_04472 0.76 +0.2 201,214 - H281DRAFT_04472 0.76 -0.6 201,214 - H281DRAFT_04472 0.76 +0.3 201,214 - H281DRAFT_04472 0.76 -0.1 201,255 + H281DRAFT_04472 0.80 -0.2 201,256 - H281DRAFT_04472 0.80 +0.3 201,318 + H281DRAFT_04472 0.84 +0.2 201,391 - -0.2 201,581 + -1.0 201,582 - -0.5 201,625 + +0.6 201,625 + -0.9 201,626 - -0.1 201,626 - +0.5 201,626 - +0.5 201,661 - +0.4 201,781 - +0.5 201,832 + -0.2 201,832 + -0.3 201,832 + -0.5 201,833 - +0.6 201,834 + -1.9 201,834 + -0.3 201,834 + +0.3 201,835 - +1.1 201,913 - -0.9 201,950 + -0.8 201,951 - -1.2 201,987 + -0.6 201,987 + -0.2 201,988 - -0.5 202,007 - +0.0 202,251 - H281DRAFT_04473 0.17 -0.2 202,808 + H281DRAFT_04473 0.49 +1.5 203,387 - H281DRAFT_04473 0.82 +1.1 203,694 + +0.1 203,695 - -0.6 203,788 + +0.1 203,788 + -2.0 203,788 + +0.6 203,928 + H281DRAFT_04474 0.20 +0.3 204,039 + H281DRAFT_04474 0.33 +0.4 204,039 + H281DRAFT_04474 0.33 +0.7 204,046 - H281DRAFT_04474 0.33 +0.2 204,046 - H281DRAFT_04474 0.33 +0.2 204,046 - H281DRAFT_04474 0.33 +0.1 204,136 - H281DRAFT_04474 0.44 +1.1 204,191 + H281DRAFT_04474 0.50 +0.7 204,378 + -1.3 204,531 + H281DRAFT_04474 0.90 -0.2 204,531 + H281DRAFT_04474 0.90 -0.4 204,531 + H281DRAFT_04474 0.90 +0.1 204,531 + H281DRAFT_04474 0.90 -0.1 204,532 - H281DRAFT_04474 0.90 +1.2 204,532 - H281DRAFT_04474 0.90 -1.1 204,532 - H281DRAFT_04474 0.90 +0.4 204,532 - H281DRAFT_04474 0.90 +0.1 204,578 + +0.5 204,579 - -0.3
Or see this region's nucleotide sequence