Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04447 and H281DRAFT_04448 are separated by 480 nucleotides H281DRAFT_04448 and H281DRAFT_04449 are separated by 109 nucleotides H281DRAFT_04449 and H281DRAFT_04450 are separated by 128 nucleotides
H281DRAFT_04447: H281DRAFT_04447 - Uncharacterised MFS-type transporter YbfB, at 167,498 to 169,060
_04447
H281DRAFT_04448: H281DRAFT_04448 - L-threonine aldolase, at 169,541 to 170,572
_04448
H281DRAFT_04449: H281DRAFT_04449 - NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding, at 170,682 to 171,212
_04449
H281DRAFT_04450: H281DRAFT_04450 - acyl-CoA thioester hydrolase, at 171,341 to 171,796
_04450
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 168.542 kb on - strand, within H281DRAFT_04447 at 168.701 kb on + strand, within H281DRAFT_04447 at 168.702 kb on - strand, within H281DRAFT_04447 at 168.702 kb on - strand, within H281DRAFT_04447 at 168.802 kb on + strand at 168.802 kb on + strand, within H281DRAFT_04447 at 168.803 kb on - strand, within H281DRAFT_04447 at 168.803 kb on - strand, within H281DRAFT_04447 at 168.866 kb on + strand, within H281DRAFT_04447 at 169.003 kb on - strand at 169.148 kb on - strand at 169.246 kb on + strand at 169.246 kb on + strand at 169.246 kb on + strand at 169.246 kb on + strand at 169.247 kb on - strand at 169.247 kb on - strand at 169.247 kb on - strand at 169.247 kb on - strand at 169.247 kb on - strand at 169.247 kb on - strand at 169.247 kb on - strand at 169.273 kb on + strand at 169.282 kb on - strand at 169.479 kb on + strand at 169.566 kb on - strand at 169.635 kb on - strand at 169.986 kb on - strand, within H281DRAFT_04448 at 170.048 kb on - strand, within H281DRAFT_04448 at 170.048 kb on - strand, within H281DRAFT_04448 at 170.474 kb on - strand at 171.446 kb on + strand, within H281DRAFT_04450 at 171.449 kb on + strand, within H281DRAFT_04450 at 171.450 kb on - strand, within H281DRAFT_04450
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 168,542 - H281DRAFT_04447 0.67 -0.4 168,701 + H281DRAFT_04447 0.77 -1.0 168,702 - H281DRAFT_04447 0.77 +0.1 168,702 - H281DRAFT_04447 0.77 +0.5 168,802 + -1.0 168,802 + H281DRAFT_04447 0.83 +0.5 168,803 - H281DRAFT_04447 0.83 +0.0 168,803 - H281DRAFT_04447 0.83 +0.1 168,866 + H281DRAFT_04447 0.88 +0.0 169,003 - +0.5 169,148 - +1.0 169,246 + -0.5 169,246 + +0.2 169,246 + +0.5 169,246 + +0.1 169,247 - -0.5 169,247 - +0.1 169,247 - +1.1 169,247 - +0.6 169,247 - +0.6 169,247 - -2.2 169,247 - +0.0 169,273 + +1.0 169,282 - +1.0 169,479 + +0.3 169,566 - +0.5 169,635 - +1.0 169,986 - H281DRAFT_04448 0.43 +0.3 170,048 - H281DRAFT_04448 0.49 -1.2 170,048 - H281DRAFT_04448 0.49 +0.8 170,474 - +1.2 171,446 + H281DRAFT_04450 0.23 +0.5 171,449 + H281DRAFT_04450 0.24 +0.5 171,450 - H281DRAFT_04450 0.24 +0.1
Or see this region's nucleotide sequence