Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04425

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04423 and H281DRAFT_04424 are separated by 379 nucleotidesH281DRAFT_04424 and H281DRAFT_04425 are separated by 235 nucleotidesH281DRAFT_04425 and H281DRAFT_04426 are separated by 31 nucleotides H281DRAFT_04423: H281DRAFT_04423 - Protein of unknown function (DUF3309), at 143,100 to 143,258 _04423 H281DRAFT_04424: H281DRAFT_04424 - hypothetical protein, at 143,638 to 143,814 _04424 H281DRAFT_04425: H281DRAFT_04425 - hypothetical protein, at 144,050 to 144,217 _04425 H281DRAFT_04426: H281DRAFT_04426 - multidrug resistance protein, MATE family, at 144,249 to 145,601 _04426 Position (kb) 144 145Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 143.053 kb on - strandat 143.093 kb on - strandat 143.103 kb on + strandat 143.103 kb on + strandat 143.103 kb on + strandat 143.103 kb on + strandat 143.103 kb on + strandat 143.104 kb on - strandat 143.390 kb on + strandat 143.398 kb on + strandat 143.398 kb on + strandat 143.399 kb on - strandat 143.399 kb on - strandat 143.726 kb on + strand, within H281DRAFT_04424at 143.726 kb on + strand, within H281DRAFT_04424at 143.727 kb on - strand, within H281DRAFT_04424at 143.727 kb on - strand, within H281DRAFT_04424at 143.846 kb on + strandat 143.846 kb on + strandat 143.848 kb on + strandat 143.848 kb on + strandat 143.848 kb on + strandat 143.848 kb on + strandat 143.848 kb on + strandat 143.849 kb on - strandat 143.849 kb on - strandat 143.849 kb on - strandat 143.849 kb on - strandat 143.851 kb on + strandat 143.851 kb on + strandat 143.852 kb on - strandat 143.852 kb on - strandat 143.852 kb on - strandat 143.852 kb on - strandat 143.852 kb on - strandat 143.918 kb on - strandat 144.155 kb on + strand, within H281DRAFT_04425at 144.251 kb on - strandat 144.353 kb on - strandat 144.463 kb on + strand, within H281DRAFT_04426at 144.464 kb on - strand, within H281DRAFT_04426at 144.464 kb on - strand, within H281DRAFT_04426at 144.508 kb on + strand, within H281DRAFT_04426at 144.580 kb on + strand, within H281DRAFT_04426at 144.581 kb on - strand, within H281DRAFT_04426at 144.627 kb on - strand, within H281DRAFT_04426at 144.722 kb on - strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.030 kb on + strand, within H281DRAFT_04426at 145.030 kb on + strand, within H281DRAFT_04426at 145.030 kb on + strand, within H281DRAFT_04426at 145.031 kb on - strand, within H281DRAFT_04426at 145.031 kb on - strand, within H281DRAFT_04426at 145.031 kb on - strand, within H281DRAFT_04426at 145.129 kb on + strand, within H281DRAFT_04426at 145.129 kb on + strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.174 kb on + strand, within H281DRAFT_04426

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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143,053 - -1.7
143,093 - -0.3
143,103 + +0.4
143,103 + +0.0
143,103 + +0.5
143,103 + +0.3
143,103 + -0.0
143,104 - +0.7
143,390 + +0.1
143,398 + +0.1
143,398 + -0.2
143,399 - +0.5
143,399 - +0.6
143,726 + H281DRAFT_04424 0.50 +0.4
143,726 + H281DRAFT_04424 0.50 -0.1
143,727 - H281DRAFT_04424 0.50 -0.5
143,727 - H281DRAFT_04424 0.50 +0.1
143,846 + +0.2
143,846 + -0.3
143,848 + +0.6
143,848 + +0.2
143,848 + -2.5
143,848 + -1.7
143,848 + -0.3
143,849 - -0.2
143,849 - +0.9
143,849 - +0.2
143,849 - +0.1
143,851 + +0.7
143,851 + +0.9
143,852 - +0.3
143,852 - -0.8
143,852 - -0.1
143,852 - -0.5
143,852 - -1.4
143,918 - -1.0
144,155 + H281DRAFT_04425 0.62 +0.7
144,251 - -1.2
144,353 - +2.8
144,463 + H281DRAFT_04426 0.16 +0.2
144,464 - H281DRAFT_04426 0.16 +0.1
144,464 - H281DRAFT_04426 0.16 +0.2
144,508 + H281DRAFT_04426 0.19 -1.0
144,580 + H281DRAFT_04426 0.24 +0.5
144,581 - H281DRAFT_04426 0.25 -3.8
144,627 - H281DRAFT_04426 0.28 -0.1
144,722 - H281DRAFT_04426 0.35 +1.3
145,024 + H281DRAFT_04426 0.57 +1.3
145,024 + H281DRAFT_04426 0.57 -0.8
145,024 + H281DRAFT_04426 0.57 +0.6
145,024 + H281DRAFT_04426 0.57 +0.4
145,024 + H281DRAFT_04426 0.57 +0.1
145,024 + H281DRAFT_04426 0.57 -0.1
145,024 + H281DRAFT_04426 0.57 -0.3
145,025 - H281DRAFT_04426 0.57 +0.4
145,025 - H281DRAFT_04426 0.57 -1.0
145,025 - H281DRAFT_04426 0.57 +0.4
145,025 - H281DRAFT_04426 0.57 -1.0
145,025 - H281DRAFT_04426 0.57 +0.1
145,025 - H281DRAFT_04426 0.57 +0.0
145,030 + H281DRAFT_04426 0.58 -1.7
145,030 + H281DRAFT_04426 0.58 -0.8
145,030 + H281DRAFT_04426 0.58 -1.0
145,031 - H281DRAFT_04426 0.58 -0.2
145,031 - H281DRAFT_04426 0.58 +0.1
145,031 - H281DRAFT_04426 0.58 +0.3
145,129 + H281DRAFT_04426 0.65 +0.9
145,129 + H281DRAFT_04426 0.65 -1.0
145,130 - H281DRAFT_04426 0.65 -1.3
145,130 - H281DRAFT_04426 0.65 +0.3
145,130 - H281DRAFT_04426 0.65 +0.2
145,130 - H281DRAFT_04426 0.65 -0.3
145,174 + H281DRAFT_04426 0.68 +0.7

Or see this region's nucleotide sequence