Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04338 and H281DRAFT_04339 are separated by 193 nucleotides H281DRAFT_04339 and H281DRAFT_04340 are separated by 733 nucleotides
H281DRAFT_04338: H281DRAFT_04338 - cyclic pyranopterin monophosphate synthase subunit MoaA, at 54,198 to 55,307
_04338
H281DRAFT_04339: H281DRAFT_04339 - RNAse E (EC 3.1.26.12), at 55,501 to 58,824
_04339
H281DRAFT_04340: H281DRAFT_04340 - 23S rRNA pseudouridine955/2504/2580 synthase, at 59,558 to 60,595
_04340
Position (kb) 55
56
57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.637 kb on + strand, within H281DRAFT_04338 at 54.637 kb on + strand, within H281DRAFT_04338 at 54.637 kb on + strand, within H281DRAFT_04338 at 54.637 kb on + strand, within H281DRAFT_04338 at 54.638 kb on - strand, within H281DRAFT_04338 at 54.638 kb on - strand, within H281DRAFT_04338 at 54.638 kb on - strand, within H281DRAFT_04338 at 54.638 kb on - strand, within H281DRAFT_04338 at 54.956 kb on + strand at 55.117 kb on + strand, within H281DRAFT_04338 at 55.118 kb on - strand, within H281DRAFT_04338 at 55.118 kb on - strand, within H281DRAFT_04338 at 55.367 kb on + strand at 55.502 kb on + strand at 56.249 kb on - strand, within H281DRAFT_04339 at 56.249 kb on - strand, within H281DRAFT_04339 at 56.976 kb on + strand, within H281DRAFT_04339 at 58.914 kb on - strand at 59.466 kb on - strand at 59.479 kb on - strand at 59.479 kb on - strand at 59.479 kb on - strand at 59.549 kb on - strand at 59.550 kb on + strand at 59.550 kb on + strand at 59.550 kb on + strand at 59.577 kb on + strand at 59.686 kb on + strand, within H281DRAFT_04340 at 59.687 kb on - strand, within H281DRAFT_04340 at 59.711 kb on + strand, within H281DRAFT_04340 at 59.711 kb on + strand, within H281DRAFT_04340 at 59.711 kb on + strand, within H281DRAFT_04340 at 59.712 kb on - strand, within H281DRAFT_04340
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 54,637 + H281DRAFT_04338 0.40 +0.3 54,637 + H281DRAFT_04338 0.40 +1.8 54,637 + H281DRAFT_04338 0.40 +1.3 54,637 + H281DRAFT_04338 0.40 +0.0 54,638 - H281DRAFT_04338 0.40 -0.4 54,638 - H281DRAFT_04338 0.40 +1.1 54,638 - H281DRAFT_04338 0.40 -0.4 54,638 - H281DRAFT_04338 0.40 +0.3 54,956 + -1.2 55,117 + H281DRAFT_04338 0.83 -1.6 55,118 - H281DRAFT_04338 0.83 +0.3 55,118 - H281DRAFT_04338 0.83 +0.7 55,367 + -2.8 55,502 + -1.3 56,249 - H281DRAFT_04339 0.23 +0.1 56,249 - H281DRAFT_04339 0.23 +0.6 56,976 + H281DRAFT_04339 0.44 -3.5 58,914 - -0.8 59,466 - -0.0 59,479 - +0.0 59,479 - -0.4 59,479 - -0.0 59,549 - -0.1 59,550 + -1.0 59,550 + +0.2 59,550 + -0.1 59,577 + -0.3 59,686 + H281DRAFT_04340 0.12 -0.9 59,687 - H281DRAFT_04340 0.12 -0.6 59,711 + H281DRAFT_04340 0.15 -3.3 59,711 + H281DRAFT_04340 0.15 -0.6 59,711 + H281DRAFT_04340 0.15 -1.7 59,712 - H281DRAFT_04340 0.15 +1.6
Or see this region's nucleotide sequence