Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04277 and H281DRAFT_04278 are separated by 272 nucleotides H281DRAFT_04278 and H281DRAFT_04279 are separated by 289 nucleotides
H281DRAFT_04277: H281DRAFT_04277 - 2-keto-3-deoxy-phosphogluconate aldolase, at 395,976 to 396,617
_04277
H281DRAFT_04278: H281DRAFT_04278 - 6-phosphogluconate dehydratase, at 396,890 to 398,815
_04278
H281DRAFT_04279: H281DRAFT_04279 - transcriptional regulator, RpiR family, at 399,105 to 399,950
_04279
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -1
0
1
2 at 395.957 kb on + strand at 395.957 kb on + strand at 395.977 kb on + strand at 395.977 kb on + strand at 395.978 kb on - strand at 395.978 kb on - strand at 395.978 kb on - strand at 396.732 kb on - strand at 396.732 kb on - strand at 396.792 kb on - strand at 396.839 kb on - strand at 397.665 kb on + strand, within H281DRAFT_04278 at 397.798 kb on - strand, within H281DRAFT_04278 at 397.798 kb on - strand, within H281DRAFT_04278 at 397.937 kb on - strand, within H281DRAFT_04278 at 397.984 kb on - strand, within H281DRAFT_04278 at 397.984 kb on - strand, within H281DRAFT_04278 at 397.984 kb on - strand, within H281DRAFT_04278 at 397.984 kb on - strand, within H281DRAFT_04278 at 397.984 kb on - strand, within H281DRAFT_04278 at 398.164 kb on - strand, within H281DRAFT_04278 at 398.461 kb on + strand, within H281DRAFT_04278 at 398.461 kb on + strand, within H281DRAFT_04278 at 398.462 kb on - strand, within H281DRAFT_04278 at 398.586 kb on + strand, within H281DRAFT_04278 at 398.587 kb on - strand, within H281DRAFT_04278 at 398.587 kb on - strand, within H281DRAFT_04278 at 399.051 kb on + strand at 399.066 kb on + strand at 399.066 kb on + strand at 399.067 kb on - strand at 399.069 kb on - strand at 399.069 kb on - strand at 399.090 kb on - strand at 399.163 kb on + strand at 399.334 kb on + strand, within H281DRAFT_04279 at 399.334 kb on + strand, within H281DRAFT_04279 at 399.334 kb on + strand, within H281DRAFT_04279 at 399.395 kb on - strand, within H281DRAFT_04279 at 399.473 kb on - strand, within H281DRAFT_04279 at 399.569 kb on + strand, within H281DRAFT_04279 at 399.569 kb on + strand, within H281DRAFT_04279 at 399.570 kb on - strand, within H281DRAFT_04279
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 395,957 + +0.9 395,957 + +2.5 395,977 + +0.7 395,977 + +1.2 395,978 - +1.0 395,978 - -0.4 395,978 - -1.1 396,732 - +0.6 396,732 - +0.4 396,792 - -0.1 396,839 - +0.3 397,665 + H281DRAFT_04278 0.40 +1.1 397,798 - H281DRAFT_04278 0.47 +0.7 397,798 - H281DRAFT_04278 0.47 +0.3 397,937 - H281DRAFT_04278 0.54 +0.5 397,984 - H281DRAFT_04278 0.57 +0.5 397,984 - H281DRAFT_04278 0.57 +0.4 397,984 - H281DRAFT_04278 0.57 +1.3 397,984 - H281DRAFT_04278 0.57 +1.1 397,984 - H281DRAFT_04278 0.57 -0.6 398,164 - H281DRAFT_04278 0.66 +0.9 398,461 + H281DRAFT_04278 0.82 +0.3 398,461 + H281DRAFT_04278 0.82 +0.5 398,462 - H281DRAFT_04278 0.82 -1.6 398,586 + H281DRAFT_04278 0.88 +1.3 398,587 - H281DRAFT_04278 0.88 +0.5 398,587 - H281DRAFT_04278 0.88 +1.2 399,051 + -0.5 399,066 + -1.4 399,066 + -0.3 399,067 - +0.3 399,069 - +0.6 399,069 - +1.5 399,090 - +0.0 399,163 + -1.0 399,334 + H281DRAFT_04279 0.27 -0.5 399,334 + H281DRAFT_04279 0.27 +0.7 399,334 + H281DRAFT_04279 0.27 +0.1 399,395 - H281DRAFT_04279 0.34 +0.7 399,473 - H281DRAFT_04279 0.43 +0.1 399,569 + H281DRAFT_04279 0.55 +0.2 399,569 + H281DRAFT_04279 0.55 +0.4 399,570 - H281DRAFT_04279 0.55 -1.3
Or see this region's nucleotide sequence