Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04248 and H281DRAFT_04249 are separated by 260 nucleotides H281DRAFT_04249 and H281DRAFT_04250 overlap by 4 nucleotides H281DRAFT_04250 and H281DRAFT_04251 are separated by 56 nucleotides
H281DRAFT_04248: H281DRAFT_04248 - 2-octaprenyl-6-methoxyphenol hydroxylase, at 367,439 to 368,809
_04248
H281DRAFT_04249: H281DRAFT_04249 - tRNA-U20-dihydrouridine synthase, at 369,070 to 370,146
_04249
H281DRAFT_04250: H281DRAFT_04250 - DNA-binding protein Fis, at 370,143 to 370,376
_04250
H281DRAFT_04251: H281DRAFT_04251 - IMP cyclohydrolase /phosphoribosylaminoimidazolecarboxamide formyltransferase, at 370,433 to 371,998
_04251
Position (kb) 369
370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 368.814 kb on - strand at 368.838 kb on + strand at 368.839 kb on - strand at 368.933 kb on + strand at 368.934 kb on - strand at 368.995 kb on + strand at 368.996 kb on - strand at 369.096 kb on - strand at 369.102 kb on + strand at 369.103 kb on - strand at 369.178 kb on + strand, within H281DRAFT_04249 at 369.325 kb on + strand, within H281DRAFT_04249 at 369.326 kb on - strand, within H281DRAFT_04249 at 369.364 kb on - strand, within H281DRAFT_04249 at 369.364 kb on - strand, within H281DRAFT_04249 at 369.617 kb on - strand, within H281DRAFT_04249 at 369.634 kb on + strand, within H281DRAFT_04249 at 369.696 kb on - strand, within H281DRAFT_04249 at 369.696 kb on - strand, within H281DRAFT_04249 at 369.887 kb on - strand, within H281DRAFT_04249 at 369.895 kb on + strand, within H281DRAFT_04249 at 369.896 kb on - strand, within H281DRAFT_04249 at 369.943 kb on + strand, within H281DRAFT_04249 at 369.944 kb on - strand, within H281DRAFT_04249 at 369.990 kb on + strand, within H281DRAFT_04249 at 369.991 kb on - strand, within H281DRAFT_04249 at 370.072 kb on + strand at 370.136 kb on + strand at 370.154 kb on + strand at 370.154 kb on + strand at 370.157 kb on + strand at 370.157 kb on + strand at 370.158 kb on - strand at 370.191 kb on + strand, within H281DRAFT_04250 at 370.191 kb on + strand, within H281DRAFT_04250 at 370.230 kb on + strand, within H281DRAFT_04250 at 370.230 kb on + strand, within H281DRAFT_04250 at 370.318 kb on - strand at 370.337 kb on + strand, within H281DRAFT_04250 at 370.337 kb on + strand, within H281DRAFT_04250 at 370.337 kb on + strand, within H281DRAFT_04250 at 370.374 kb on + strand at 370.374 kb on + strand at 370.374 kb on + strand at 370.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 368,814 - -0.3 368,838 + -0.2 368,839 - +0.8 368,933 + -0.9 368,934 - -0.4 368,995 + +0.5 368,996 - -1.3 369,096 - +0.1 369,102 + -0.9 369,103 - +0.3 369,178 + H281DRAFT_04249 0.10 -0.7 369,325 + H281DRAFT_04249 0.24 -0.5 369,326 - H281DRAFT_04249 0.24 +0.1 369,364 - H281DRAFT_04249 0.27 +0.5 369,364 - H281DRAFT_04249 0.27 +0.7 369,617 - H281DRAFT_04249 0.51 +0.3 369,634 + H281DRAFT_04249 0.52 +0.0 369,696 - H281DRAFT_04249 0.58 +0.1 369,696 - H281DRAFT_04249 0.58 +0.9 369,887 - H281DRAFT_04249 0.76 -0.1 369,895 + H281DRAFT_04249 0.77 -0.6 369,896 - H281DRAFT_04249 0.77 +0.4 369,943 + H281DRAFT_04249 0.81 -0.7 369,944 - H281DRAFT_04249 0.81 -1.4 369,990 + H281DRAFT_04249 0.85 +0.4 369,991 - H281DRAFT_04249 0.86 -3.1 370,072 + -1.5 370,136 + +0.2 370,154 + +0.3 370,154 + -2.7 370,157 + -0.2 370,157 + -0.3 370,158 - -0.8 370,191 + H281DRAFT_04250 0.21 -0.9 370,191 + H281DRAFT_04250 0.21 -0.2 370,230 + H281DRAFT_04250 0.37 -1.1 370,230 + H281DRAFT_04250 0.37 -0.6 370,318 - -1.8 370,337 + H281DRAFT_04250 0.83 +0.3 370,337 + H281DRAFT_04250 0.83 -1.4 370,337 + H281DRAFT_04250 0.83 -1.3 370,374 + +0.2 370,374 + -0.8 370,374 + -0.6 370,384 + -0.7
Or see this region's nucleotide sequence