Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04138

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04137 and H281DRAFT_04138 are separated by 71 nucleotidesH281DRAFT_04138 and H281DRAFT_04139 overlap by 14 nucleotidesH281DRAFT_04139 and H281DRAFT_04140 are separated by 231 nucleotides H281DRAFT_04137: H281DRAFT_04137 - cyclopropane-fatty-acyl-phospholipid synthase, at 247,253 to 248,467 _04137 H281DRAFT_04138: H281DRAFT_04138 - Uncharacterized conserved protein YecE, DUF72 family, at 248,539 to 249,945 _04138 H281DRAFT_04139: H281DRAFT_04139 - peptide-methionine (S)-S-oxide reductase, at 249,932 to 250,480 _04139 H281DRAFT_04140: H281DRAFT_04140 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 250,712 to 251,245 _04140 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1at 247.565 kb on + strand, within H281DRAFT_04137at 247.608 kb on - strand, within H281DRAFT_04137at 247.613 kb on + strand, within H281DRAFT_04137at 247.634 kb on + strand, within H281DRAFT_04137at 247.634 kb on + strand, within H281DRAFT_04137at 247.634 kb on + strand, within H281DRAFT_04137at 247.634 kb on + strand, within H281DRAFT_04137at 247.634 kb on + strand, within H281DRAFT_04137at 247.635 kb on - strand, within H281DRAFT_04137at 247.635 kb on - strand, within H281DRAFT_04137at 247.635 kb on - strand, within H281DRAFT_04137at 247.665 kb on - strand, within H281DRAFT_04137at 247.676 kb on + strand, within H281DRAFT_04137at 247.677 kb on - strand, within H281DRAFT_04137at 248.016 kb on - strand, within H281DRAFT_04137at 248.135 kb on + strand, within H281DRAFT_04137at 248.136 kb on - strand, within H281DRAFT_04137at 248.136 kb on - strand, within H281DRAFT_04137at 248.237 kb on + strand, within H281DRAFT_04137at 248.337 kb on - strand, within H281DRAFT_04137at 248.337 kb on - strand, within H281DRAFT_04137at 248.384 kb on + strandat 248.385 kb on - strandat 248.394 kb on + strandat 248.445 kb on - strandat 248.445 kb on - strandat 248.450 kb on + strandat 248.515 kb on + strandat 248.624 kb on + strandat 248.625 kb on - strandat 249.073 kb on + strand, within H281DRAFT_04138at 249.073 kb on + strand, within H281DRAFT_04138at 249.073 kb on + strand, within H281DRAFT_04138at 249.074 kb on - strand, within H281DRAFT_04138at 249.161 kb on - strand, within H281DRAFT_04138at 249.225 kb on + strand, within H281DRAFT_04138at 249.437 kb on + strand, within H281DRAFT_04138at 249.437 kb on + strand, within H281DRAFT_04138at 249.437 kb on + strand, within H281DRAFT_04138at 249.438 kb on - strand, within H281DRAFT_04138at 249.493 kb on + strand, within H281DRAFT_04138at 249.494 kb on - strand, within H281DRAFT_04138at 249.569 kb on - strand, within H281DRAFT_04138at 249.785 kb on - strand, within H281DRAFT_04138at 250.032 kb on + strand, within H281DRAFT_04139at 250.044 kb on + strand, within H281DRAFT_04139at 250.044 kb on + strand, within H281DRAFT_04139at 250.045 kb on - strand, within H281DRAFT_04139at 250.045 kb on - strand, within H281DRAFT_04139at 250.082 kb on + strand, within H281DRAFT_04139at 250.082 kb on + strandat 250.083 kb on - strand, within H281DRAFT_04139at 250.107 kb on + strand, within H281DRAFT_04139at 250.107 kb on + strand, within H281DRAFT_04139at 250.108 kb on - strand, within H281DRAFT_04139at 250.108 kb on - strand, within H281DRAFT_04139at 250.108 kb on - strand, within H281DRAFT_04139at 250.256 kb on - strand, within H281DRAFT_04139at 250.347 kb on + strand, within H281DRAFT_04139at 250.347 kb on + strand, within H281DRAFT_04139at 250.348 kb on - strand, within H281DRAFT_04139at 250.348 kb on - strand, within H281DRAFT_04139at 250.378 kb on - strand, within H281DRAFT_04139at 250.416 kb on + strand, within H281DRAFT_04139at 250.416 kb on + strand, within H281DRAFT_04139at 250.417 kb on - strand, within H281DRAFT_04139at 250.513 kb on - strandat 250.534 kb on - strandat 250.540 kb on + strandat 250.541 kb on - strandat 250.663 kb on + strandat 250.664 kb on - strandat 250.871 kb on - strand, within H281DRAFT_04140at 250.871 kb on - strand, within H281DRAFT_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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247,565 + H281DRAFT_04137 0.26 -0.0
247,608 - H281DRAFT_04137 0.29 +0.3
247,613 + H281DRAFT_04137 0.30 +0.8
247,634 + H281DRAFT_04137 0.31 -0.2
247,634 + H281DRAFT_04137 0.31 +1.0
247,634 + H281DRAFT_04137 0.31 -0.4
247,634 + H281DRAFT_04137 0.31 -1.2
247,634 + H281DRAFT_04137 0.31 -0.5
247,635 - H281DRAFT_04137 0.31 +0.4
247,635 - H281DRAFT_04137 0.31 -0.4
247,635 - H281DRAFT_04137 0.31 +1.1
247,665 - H281DRAFT_04137 0.34 +0.2
247,676 + H281DRAFT_04137 0.35 -0.3
247,677 - H281DRAFT_04137 0.35 +0.9
248,016 - H281DRAFT_04137 0.63 +0.3
248,135 + H281DRAFT_04137 0.73 +1.3
248,136 - H281DRAFT_04137 0.73 -0.7
248,136 - H281DRAFT_04137 0.73 +0.9
248,237 + H281DRAFT_04137 0.81 -0.1
248,337 - H281DRAFT_04137 0.89 +0.3
248,337 - H281DRAFT_04137 0.89 -1.1
248,384 + -0.9
248,385 - -1.7
248,394 + +0.2
248,445 - -0.1
248,445 - -1.1
248,450 + -0.4
248,515 + -0.3
248,624 + -0.8
248,625 - +0.9
249,073 + H281DRAFT_04138 0.38 +0.5
249,073 + H281DRAFT_04138 0.38 +0.7
249,073 + H281DRAFT_04138 0.38 -0.7
249,074 - H281DRAFT_04138 0.38 -0.3
249,161 - H281DRAFT_04138 0.44 -0.8
249,225 + H281DRAFT_04138 0.49 +0.8
249,437 + H281DRAFT_04138 0.64 +0.3
249,437 + H281DRAFT_04138 0.64 -0.2
249,437 + H281DRAFT_04138 0.64 -1.7
249,438 - H281DRAFT_04138 0.64 +0.7
249,493 + H281DRAFT_04138 0.68 +0.4
249,494 - H281DRAFT_04138 0.68 +0.8
249,569 - H281DRAFT_04138 0.73 +1.0
249,785 - H281DRAFT_04138 0.89 +0.8
250,032 + H281DRAFT_04139 0.18 +0.8
250,044 + H281DRAFT_04139 0.20 -0.5
250,044 + H281DRAFT_04139 0.20 -0.1
250,045 - H281DRAFT_04139 0.21 -1.3
250,045 - H281DRAFT_04139 0.21 +0.4
250,082 + H281DRAFT_04139 0.27 +0.0
250,082 + -1.0
250,083 - H281DRAFT_04139 0.28 -0.6
250,107 + H281DRAFT_04139 0.32 -0.6
250,107 + H281DRAFT_04139 0.32 +0.4
250,108 - H281DRAFT_04139 0.32 -2.7
250,108 - H281DRAFT_04139 0.32 +0.6
250,108 - H281DRAFT_04139 0.32 -0.5
250,256 - H281DRAFT_04139 0.59 -0.4
250,347 + H281DRAFT_04139 0.76 +0.3
250,347 + H281DRAFT_04139 0.76 +0.5
250,348 - H281DRAFT_04139 0.76 -0.3
250,348 - H281DRAFT_04139 0.76 +0.1
250,378 - H281DRAFT_04139 0.81 +0.5
250,416 + H281DRAFT_04139 0.88 -0.6
250,416 + H281DRAFT_04139 0.88 +0.8
250,417 - H281DRAFT_04139 0.88 +0.2
250,513 - +0.3
250,534 - +0.3
250,540 + -2.7
250,541 - -0.3
250,663 + -0.5
250,664 - -0.0
250,871 - H281DRAFT_04140 0.30 -0.0
250,871 - H281DRAFT_04140 0.30 +1.2

Or see this region's nucleotide sequence