Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04074 and H281DRAFT_04075 overlap by 4 nucleotides H281DRAFT_04075 and H281DRAFT_04076 are separated by 158 nucleotides H281DRAFT_04076 and H281DRAFT_04077 are separated by 165 nucleotides
H281DRAFT_04074: H281DRAFT_04074 - 16S rRNA (cytosine967-C5)-methyltransferase, at 176,101 to 177,360
_04074
H281DRAFT_04075: H281DRAFT_04075 - formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase, at 177,357 to 177,968
_04075
H281DRAFT_04076: H281DRAFT_04076 - FMN adenylyltransferase /riboflavin kinase, at 178,127 to 179,122
_04076
H281DRAFT_04077: H281DRAFT_04077 - Isoleucyl-tRNA synthetase, at 179,288 to 182,125
_04077
Position (kb) 178
179
180 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 177.352 kb on + strand at 177.352 kb on + strand at 177.352 kb on + strand at 177.352 kb on + strand at 177.352 kb on + strand at 177.352 kb on + strand at 177.352 kb on + strand at 177.352 kb on + strand at 177.352 kb on + strand at 177.353 kb on - strand at 177.413 kb on + strand at 177.414 kb on - strand at 177.414 kb on - strand at 177.479 kb on - strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.482 kb on + strand, within H281DRAFT_04075 at 177.483 kb on - strand, within H281DRAFT_04075 at 177.483 kb on - strand, within H281DRAFT_04075 at 177.483 kb on - strand, within H281DRAFT_04075 at 177.744 kb on - strand, within H281DRAFT_04075 at 177.959 kb on + strand at 177.959 kb on + strand at 177.960 kb on - strand at 178.076 kb on + strand at 178.076 kb on + strand at 178.077 kb on - strand at 178.078 kb on + strand at 178.078 kb on + strand at 178.078 kb on + strand at 179.116 kb on + strand at 179.116 kb on + strand at 179.116 kb on + strand at 179.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 177,352 + +0.4 177,352 + +0.5 177,352 + +1.1 177,352 + +0.4 177,352 + -1.8 177,352 + -0.3 177,352 + +0.4 177,352 + -1.1 177,352 + +0.3 177,353 - -0.1 177,413 + +0.0 177,414 - -4.1 177,414 - -1.1 177,479 - H281DRAFT_04075 0.20 -0.2 177,482 + H281DRAFT_04075 0.20 -3.7 177,482 + H281DRAFT_04075 0.20 -2.3 177,482 + H281DRAFT_04075 0.20 -1.0 177,482 + H281DRAFT_04075 0.20 -2.0 177,482 + H281DRAFT_04075 0.20 -1.5 177,482 + H281DRAFT_04075 0.20 -2.0 177,482 + H281DRAFT_04075 0.20 -1.4 177,482 + H281DRAFT_04075 0.20 -3.6 177,482 + H281DRAFT_04075 0.20 -2.1 177,482 + H281DRAFT_04075 0.20 -5.0 177,483 - H281DRAFT_04075 0.21 -2.1 177,483 - H281DRAFT_04075 0.21 -2.6 177,483 - H281DRAFT_04075 0.21 +0.4 177,744 - H281DRAFT_04075 0.63 -3.4 177,959 + +0.4 177,959 + -1.6 177,960 - +0.2 178,076 + -0.1 178,076 + -1.2 178,077 - +0.2 178,078 + -1.2 178,078 + -0.1 178,078 + +1.3 179,116 + +0.0 179,116 + +0.1 179,116 + +1.8 179,264 + +0.0
Or see this region's nucleotide sequence