Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04061 and H281DRAFT_04062 are separated by 22 nucleotides H281DRAFT_04062 and H281DRAFT_04063 are separated by 229 nucleotides
H281DRAFT_04061: H281DRAFT_04061 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 161,989 to 163,158
_04061
H281DRAFT_04062: H281DRAFT_04062 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 163,181 to 164,131
_04062
H281DRAFT_04063: H281DRAFT_04063 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 164,361 to 165,563
_04063
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 162.399 kb on + strand, within H281DRAFT_04061 at 162.530 kb on + strand, within H281DRAFT_04061 at 162.531 kb on - strand, within H281DRAFT_04061 at 162.533 kb on + strand, within H281DRAFT_04061 at 162.533 kb on + strand, within H281DRAFT_04061 at 162.534 kb on - strand, within H281DRAFT_04061 at 162.536 kb on + strand, within H281DRAFT_04061 at 162.536 kb on + strand, within H281DRAFT_04061 at 162.536 kb on + strand, within H281DRAFT_04061 at 162.537 kb on - strand, within H281DRAFT_04061 at 162.537 kb on - strand, within H281DRAFT_04061 at 162.542 kb on + strand, within H281DRAFT_04061 at 162.543 kb on - strand, within H281DRAFT_04061 at 162.722 kb on + strand, within H281DRAFT_04061 at 162.722 kb on + strand, within H281DRAFT_04061 at 162.757 kb on + strand, within H281DRAFT_04061 at 162.895 kb on - strand, within H281DRAFT_04061 at 162.921 kb on + strand, within H281DRAFT_04061 at 162.922 kb on - strand, within H281DRAFT_04061 at 162.922 kb on - strand, within H281DRAFT_04061 at 162.923 kb on + strand, within H281DRAFT_04061 at 162.924 kb on - strand, within H281DRAFT_04061 at 162.987 kb on - strand, within H281DRAFT_04061 at 162.987 kb on - strand, within H281DRAFT_04061 at 162.987 kb on - strand, within H281DRAFT_04061 at 163.019 kb on + strand, within H281DRAFT_04061 at 163.019 kb on + strand, within H281DRAFT_04061 at 163.020 kb on - strand, within H281DRAFT_04061 at 163.020 kb on - strand, within H281DRAFT_04061 at 163.273 kb on - strand at 163.276 kb on + strand, within H281DRAFT_04062 at 163.310 kb on - strand, within H281DRAFT_04062 at 163.434 kb on + strand, within H281DRAFT_04062 at 163.435 kb on - strand, within H281DRAFT_04062 at 163.875 kb on + strand, within H281DRAFT_04062 at 163.970 kb on + strand, within H281DRAFT_04062 at 163.971 kb on - strand, within H281DRAFT_04062 at 164.046 kb on + strand at 164.056 kb on + strand at 164.056 kb on + strand at 164.056 kb on + strand at 164.057 kb on - strand at 164.057 kb on - strand at 164.057 kb on - strand at 164.057 kb on - strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.080 kb on - strand at 164.106 kb on - strand at 164.125 kb on + strand at 164.125 kb on + strand at 164.126 kb on - strand at 164.133 kb on + strand at 164.134 kb on - strand at 164.134 kb on - strand at 164.143 kb on + strand at 164.229 kb on + strand at 164.229 kb on + strand at 164.363 kb on - strand at 164.363 kb on - strand at 164.410 kb on + strand at 164.411 kb on - strand at 164.411 kb on - strand at 164.411 kb on - strand at 164.411 kb on - strand at 164.417 kb on + strand at 164.480 kb on - strand at 164.480 kb on - strand at 164.557 kb on + strand, within H281DRAFT_04063 at 164.557 kb on + strand, within H281DRAFT_04063 at 164.558 kb on - strand, within H281DRAFT_04063 at 164.569 kb on + strand, within H281DRAFT_04063 at 164.569 kb on + strand, within H281DRAFT_04063 at 164.570 kb on - strand, within H281DRAFT_04063 at 164.570 kb on - strand, within H281DRAFT_04063 at 164.570 kb on - strand, within H281DRAFT_04063 at 164.584 kb on + strand, within H281DRAFT_04063 at 164.584 kb on + strand, within H281DRAFT_04063 at 164.585 kb on - strand, within H281DRAFT_04063 at 164.585 kb on - strand, within H281DRAFT_04063 at 164.617 kb on + strand, within H281DRAFT_04063 at 164.617 kb on + strand, within H281DRAFT_04063 at 164.617 kb on + strand, within H281DRAFT_04063 at 164.618 kb on - strand, within H281DRAFT_04063 at 164.618 kb on - strand, within H281DRAFT_04063 at 164.727 kb on - strand, within H281DRAFT_04063 at 165.071 kb on - strand, within H281DRAFT_04063
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 162,399 + H281DRAFT_04061 0.35 -0.4 162,530 + H281DRAFT_04061 0.46 -1.0 162,531 - H281DRAFT_04061 0.46 -0.1 162,533 + H281DRAFT_04061 0.46 -2.1 162,533 + H281DRAFT_04061 0.46 +0.5 162,534 - H281DRAFT_04061 0.47 +0.5 162,536 + H281DRAFT_04061 0.47 +0.9 162,536 + H281DRAFT_04061 0.47 +1.5 162,536 + H281DRAFT_04061 0.47 +0.0 162,537 - H281DRAFT_04061 0.47 +1.4 162,537 - H281DRAFT_04061 0.47 +0.3 162,542 + H281DRAFT_04061 0.47 +0.3 162,543 - H281DRAFT_04061 0.47 -0.2 162,722 + H281DRAFT_04061 0.63 -0.1 162,722 + H281DRAFT_04061 0.63 +0.1 162,757 + H281DRAFT_04061 0.66 -0.4 162,895 - H281DRAFT_04061 0.77 +0.1 162,921 + H281DRAFT_04061 0.80 -1.0 162,922 - H281DRAFT_04061 0.80 +0.5 162,922 - H281DRAFT_04061 0.80 +2.3 162,923 + H281DRAFT_04061 0.80 +0.6 162,924 - H281DRAFT_04061 0.80 +0.3 162,987 - H281DRAFT_04061 0.85 +1.2 162,987 - H281DRAFT_04061 0.85 +0.4 162,987 - H281DRAFT_04061 0.85 +0.1 163,019 + H281DRAFT_04061 0.88 +1.5 163,019 + H281DRAFT_04061 0.88 -0.5 163,020 - H281DRAFT_04061 0.88 -1.0 163,020 - H281DRAFT_04061 0.88 +1.1 163,273 - +0.1 163,276 + H281DRAFT_04062 0.10 -1.2 163,310 - H281DRAFT_04062 0.14 -1.9 163,434 + H281DRAFT_04062 0.27 +0.5 163,435 - H281DRAFT_04062 0.27 -0.7 163,875 + H281DRAFT_04062 0.73 -0.3 163,970 + H281DRAFT_04062 0.83 -2.7 163,971 - H281DRAFT_04062 0.83 -0.6 164,046 + +0.5 164,056 + -0.6 164,056 + -0.1 164,056 + -0.1 164,057 - +0.6 164,057 - -0.5 164,057 - +0.4 164,057 - +0.7 164,079 + +1.4 164,079 + -0.2 164,079 + +0.7 164,080 - +0.4 164,106 - -0.2 164,125 + +0.2 164,125 + +0.6 164,126 - +0.1 164,133 + +0.6 164,134 - +0.8 164,134 - +0.2 164,143 + -1.0 164,229 + +0.5 164,229 + +0.1 164,363 - -1.1 164,363 - +0.3 164,410 + +0.5 164,411 - -0.1 164,411 - +0.8 164,411 - +0.5 164,411 - +0.6 164,417 + -0.4 164,480 - +0.4 164,480 - +0.1 164,557 + H281DRAFT_04063 0.16 +2.0 164,557 + H281DRAFT_04063 0.16 +1.1 164,558 - H281DRAFT_04063 0.16 +0.3 164,569 + H281DRAFT_04063 0.17 +0.0 164,569 + H281DRAFT_04063 0.17 +0.3 164,570 - H281DRAFT_04063 0.17 +2.1 164,570 - H281DRAFT_04063 0.17 +0.5 164,570 - H281DRAFT_04063 0.17 +0.0 164,584 + H281DRAFT_04063 0.19 -1.0 164,584 + H281DRAFT_04063 0.19 -0.1 164,585 - H281DRAFT_04063 0.19 +0.4 164,585 - H281DRAFT_04063 0.19 +0.2 164,617 + H281DRAFT_04063 0.21 +1.0 164,617 + H281DRAFT_04063 0.21 +0.3 164,617 + H281DRAFT_04063 0.21 -0.9 164,618 - H281DRAFT_04063 0.21 +0.9 164,618 - H281DRAFT_04063 0.21 +0.8 164,727 - H281DRAFT_04063 0.30 +0.0 165,071 - H281DRAFT_04063 0.59 +0.7
Or see this region's nucleotide sequence