Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03905

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03904 and H281DRAFT_03905 are separated by 14 nucleotidesH281DRAFT_03905 and H281DRAFT_03906 overlap by 11 nucleotides H281DRAFT_03904: H281DRAFT_03904 - D-methionine transport system substrate-binding protein, at 891 to 1,688 _03904 H281DRAFT_03905: H281DRAFT_03905 - D-methionine transport system permease protein, at 1,703 to 2,356 _03905 H281DRAFT_03906: H281DRAFT_03906 - D-methionine transport system ATP-binding protein, at 2,346 to 3,380 _03906 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.736 kb on - strandat 0.835 kb on + strandat 0.835 kb on + strandat 0.836 kb on - strandat 0.836 kb on - strandat 0.852 kb on + strandat 0.989 kb on + strand, within H281DRAFT_03904at 0.989 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.028 kb on - strand, within H281DRAFT_03904at 1.028 kb on - strand, within H281DRAFT_03904at 1.169 kb on + strand, within H281DRAFT_03904at 1.169 kb on + strand, within H281DRAFT_03904at 1.170 kb on - strand, within H281DRAFT_03904at 1.338 kb on + strand, within H281DRAFT_03904at 1.351 kb on + strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.429 kb on + strand, within H281DRAFT_03904at 1.429 kb on + strand, within H281DRAFT_03904at 1.445 kb on - strand, within H281DRAFT_03904at 1.445 kb on - strand, within H281DRAFT_03904at 1.642 kb on - strandat 1.705 kb on - strandat 1.708 kb on + strandat 1.709 kb on - strandat 1.709 kb on - strandat 1.878 kb on + strand, within H281DRAFT_03905at 1.956 kb on - strand, within H281DRAFT_03905at 1.956 kb on - strand, within H281DRAFT_03905at 1.956 kb on - strand, within H281DRAFT_03905at 2.162 kb on - strand, within H281DRAFT_03905at 2.241 kb on + strand, within H281DRAFT_03905at 2.242 kb on - strand, within H281DRAFT_03905at 2.336 kb on - strandat 2.336 kb on - strandat 2.356 kb on + strandat 2.356 kb on + strandat 2.357 kb on - strandat 2.357 kb on - strandat 2.357 kb on - strandat 2.357 kb on - strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.512 kb on + strand, within H281DRAFT_03906at 3.082 kb on + strand, within H281DRAFT_03906at 3.082 kb on + strand, within H281DRAFT_03906

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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736 - +0.2
835 + +0.5
835 + +0.4
836 - +0.4
836 - -0.5
852 + -0.7
989 + H281DRAFT_03904 0.12 +0.9
989 + H281DRAFT_03904 0.12 +0.2
1,027 + H281DRAFT_03904 0.17 +0.8
1,027 + H281DRAFT_03904 0.17 -1.4
1,027 + H281DRAFT_03904 0.17 +0.8
1,027 + H281DRAFT_03904 0.17 -0.9
1,028 - H281DRAFT_03904 0.17 +0.2
1,028 - H281DRAFT_03904 0.17 -0.0
1,169 + H281DRAFT_03904 0.35 +0.3
1,169 + H281DRAFT_03904 0.35 +0.2
1,170 - H281DRAFT_03904 0.35 -0.3
1,338 + H281DRAFT_03904 0.56 +0.6
1,351 + H281DRAFT_03904 0.58 +0.6
1,352 - H281DRAFT_03904 0.58 -0.6
1,352 - H281DRAFT_03904 0.58 -0.8
1,352 - H281DRAFT_03904 0.58 +0.1
1,429 + H281DRAFT_03904 0.67 +0.5
1,429 + H281DRAFT_03904 0.67 -0.3
1,445 - H281DRAFT_03904 0.69 +1.4
1,445 - H281DRAFT_03904 0.69 -0.2
1,642 - +0.2
1,705 - +0.8
1,708 + +0.2
1,709 - -0.3
1,709 - -0.2
1,878 + H281DRAFT_03905 0.27 +1.7
1,956 - H281DRAFT_03905 0.39 -0.3
1,956 - H281DRAFT_03905 0.39 -0.2
1,956 - H281DRAFT_03905 0.39 +0.6
2,162 - H281DRAFT_03905 0.70 -0.7
2,241 + H281DRAFT_03905 0.82 +0.8
2,242 - H281DRAFT_03905 0.82 -0.3
2,336 - +2.5
2,336 - -3.1
2,356 + +0.2
2,356 + -0.4
2,357 - +0.4
2,357 - +0.5
2,357 - +0.3
2,357 - +0.3
2,395 + -0.2
2,395 + -1.4
2,395 + -0.4
2,395 + +0.5
2,395 + -0.8
2,512 + H281DRAFT_03906 0.16 +0.1
3,082 + H281DRAFT_03906 0.71 +1.4
3,082 + H281DRAFT_03906 0.71 -0.2

Or see this region's nucleotide sequence