Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03688

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03686 and H281DRAFT_03687 are separated by 200 nucleotidesH281DRAFT_03687 and H281DRAFT_03688 are separated by 21 nucleotidesH281DRAFT_03688 and H281DRAFT_03689 overlap by 94 nucleotidesH281DRAFT_03689 and H281DRAFT_03690 are separated by 147 nucleotides H281DRAFT_03686: H281DRAFT_03686 - GntR family transcriptional regulator / MocR family aminotransferase, at 200,344 to 201,855 _03686 H281DRAFT_03687: H281DRAFT_03687 - hypothetical protein, at 202,056 to 202,454 _03687 H281DRAFT_03688: H281DRAFT_03688 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 202,476 to 203,120 _03688 H281DRAFT_03689: H281DRAFT_03689 - Ribosomal protein S18 acetylase RimI, at 203,027 to 203,554 _03689 H281DRAFT_03690: H281DRAFT_03690 - Uncharacterized conserved protein, at 203,702 to 204,151 _03690 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 201.536 kb on + strand, within H281DRAFT_03686at 201.537 kb on - strand, within H281DRAFT_03686at 201.537 kb on - strand, within H281DRAFT_03686at 201.538 kb on + strand, within H281DRAFT_03686at 201.599 kb on + strandat 201.693 kb on - strand, within H281DRAFT_03686at 201.769 kb on - strandat 201.769 kb on - strandat 201.769 kb on - strandat 201.891 kb on - strandat 202.364 kb on - strand, within H281DRAFT_03687at 202.521 kb on - strandat 202.567 kb on + strand, within H281DRAFT_03688at 202.567 kb on + strand, within H281DRAFT_03688at 202.739 kb on - strand, within H281DRAFT_03688at 202.974 kb on + strand, within H281DRAFT_03688at 202.974 kb on + strand, within H281DRAFT_03688at 203.029 kb on - strandat 203.029 kb on - strandat 203.160 kb on + strand, within H281DRAFT_03689at 203.160 kb on + strand, within H281DRAFT_03689at 203.161 kb on - strand, within H281DRAFT_03689at 203.161 kb on - strand, within H281DRAFT_03689at 203.291 kb on + strand, within H281DRAFT_03689at 203.291 kb on + strand, within H281DRAFT_03689at 203.295 kb on + strand, within H281DRAFT_03689at 203.296 kb on - strand, within H281DRAFT_03689at 203.296 kb on - strand, within H281DRAFT_03689at 203.296 kb on - strand, within H281DRAFT_03689at 203.296 kb on - strand, within H281DRAFT_03689at 203.311 kb on - strand, within H281DRAFT_03689at 203.340 kb on + strand, within H281DRAFT_03689at 203.478 kb on + strand, within H281DRAFT_03689at 203.479 kb on - strand, within H281DRAFT_03689at 203.609 kb on + strandat 203.609 kb on + strandat 203.610 kb on - strandat 203.610 kb on - strandat 203.656 kb on - strandat 203.656 kb on - strandat 203.656 kb on - strandat 203.703 kb on + strandat 203.706 kb on + strandat 203.801 kb on + strand, within H281DRAFT_03690at 203.802 kb on - strand, within H281DRAFT_03690at 203.887 kb on - strand, within H281DRAFT_03690at 203.954 kb on + strand, within H281DRAFT_03690at 203.954 kb on + strand, within H281DRAFT_03690at 204.037 kb on + strand, within H281DRAFT_03690at 204.037 kb on + strand, within H281DRAFT_03690at 204.037 kb on + strand, within H281DRAFT_03690at 204.038 kb on - strand, within H281DRAFT_03690at 204.038 kb on - strand, within H281DRAFT_03690

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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201,536 + H281DRAFT_03686 0.79 +1.2
201,537 - H281DRAFT_03686 0.79 -1.0
201,537 - H281DRAFT_03686 0.79 -0.2
201,538 + H281DRAFT_03686 0.79 +0.0
201,599 + +0.3
201,693 - H281DRAFT_03686 0.89 +0.3
201,769 - +0.4
201,769 - +0.4
201,769 - -1.2
201,891 - -0.1
202,364 - H281DRAFT_03687 0.77 +1.6
202,521 - +0.2
202,567 + H281DRAFT_03688 0.14 +0.2
202,567 + H281DRAFT_03688 0.14 +0.7
202,739 - H281DRAFT_03688 0.41 +0.5
202,974 + H281DRAFT_03688 0.77 +0.6
202,974 + H281DRAFT_03688 0.77 -0.0
203,029 - +0.3
203,029 - +1.0
203,160 + H281DRAFT_03689 0.25 +2.3
203,160 + H281DRAFT_03689 0.25 +0.3
203,161 - H281DRAFT_03689 0.25 -1.8
203,161 - H281DRAFT_03689 0.25 +0.5
203,291 + H281DRAFT_03689 0.50 -0.7
203,291 + H281DRAFT_03689 0.50 -0.2
203,295 + H281DRAFT_03689 0.51 +0.1
203,296 - H281DRAFT_03689 0.51 -0.7
203,296 - H281DRAFT_03689 0.51 +0.3
203,296 - H281DRAFT_03689 0.51 -1.6
203,296 - H281DRAFT_03689 0.51 -0.4
203,311 - H281DRAFT_03689 0.54 -1.0
203,340 + H281DRAFT_03689 0.59 +0.5
203,478 + H281DRAFT_03689 0.85 +0.1
203,479 - H281DRAFT_03689 0.86 +2.3
203,609 + +0.5
203,609 + -0.4
203,610 - -1.5
203,610 - +0.1
203,656 - +0.7
203,656 - +0.1
203,656 - +1.4
203,703 + -0.2
203,706 + -0.0
203,801 + H281DRAFT_03690 0.22 +0.4
203,802 - H281DRAFT_03690 0.22 -0.3
203,887 - H281DRAFT_03690 0.41 +0.5
203,954 + H281DRAFT_03690 0.56 +0.6
203,954 + H281DRAFT_03690 0.56 +0.4
204,037 + H281DRAFT_03690 0.74 -0.2
204,037 + H281DRAFT_03690 0.74 -0.8
204,037 + H281DRAFT_03690 0.74 +0.9
204,038 - H281DRAFT_03690 0.75 +0.8
204,038 - H281DRAFT_03690 0.75 -0.1

Or see this region's nucleotide sequence