Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03335 and H281DRAFT_03336 overlap by 4 nucleotides H281DRAFT_03336 and H281DRAFT_03337 are separated by 40 nucleotides H281DRAFT_03337 and H281DRAFT_03338 are separated by 54 nucleotides
H281DRAFT_03335: H281DRAFT_03335 - transcriptional regulator, LysR family, at 392,279 to 393,247
_03335
H281DRAFT_03336: H281DRAFT_03336 - Na+/H+-dicarboxylate symporter, at 393,244 to 394,560
_03336
H281DRAFT_03337: H281DRAFT_03337 - molybdate transport system substrate-binding protein, at 394,601 to 395,383
_03337
H281DRAFT_03338: H281DRAFT_03338 - MFS transporter, MHS family, citrate/tricarballylate:H+ symporter, at 395,438 to 396,736
_03338
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1 at 392.861 kb on + strand, within H281DRAFT_03335 at 392.862 kb on - strand, within H281DRAFT_03335 at 393.381 kb on - strand, within H281DRAFT_03336 at 393.559 kb on - strand, within H281DRAFT_03336 at 393.605 kb on - strand, within H281DRAFT_03336 at 393.925 kb on + strand, within H281DRAFT_03336 at 393.926 kb on - strand, within H281DRAFT_03336 at 394.009 kb on + strand, within H281DRAFT_03336 at 394.010 kb on - strand, within H281DRAFT_03336 at 394.668 kb on + strand at 394.933 kb on - strand, within H281DRAFT_03337 at 395.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 392,861 + H281DRAFT_03335 0.60 +0.0 392,862 - H281DRAFT_03335 0.60 -1.6 393,381 - H281DRAFT_03336 0.10 +0.3 393,559 - H281DRAFT_03336 0.24 -0.1 393,605 - H281DRAFT_03336 0.27 +0.4 393,925 + H281DRAFT_03336 0.52 -0.6 393,926 - H281DRAFT_03336 0.52 +0.0 394,009 + H281DRAFT_03336 0.58 +0.7 394,010 - H281DRAFT_03336 0.58 -1.8 394,668 + +0.2 394,933 - H281DRAFT_03337 0.42 +0.5 395,390 - +0.6
Or see this region's nucleotide sequence