Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03061 and H281DRAFT_03062 are separated by 186 nucleotides H281DRAFT_03062 and H281DRAFT_03063 are separated by 171 nucleotides H281DRAFT_03063 and H281DRAFT_03064 are separated by 32 nucleotides H281DRAFT_03064 and H281DRAFT_03065 are separated by 88 nucleotides
H281DRAFT_03061: H281DRAFT_03061 - hypothetical protein, at 94,203 to 94,553
_03061
H281DRAFT_03062: H281DRAFT_03062 - Uncharacterized conserved protein YndB, AHSA1/START domain, at 94,740 to 95,186
_03062
H281DRAFT_03063: H281DRAFT_03063 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 95,358 to 96,155
_03063
H281DRAFT_03064: H281DRAFT_03064 - Uncharacterized conserved protein, at 96,188 to 96,526
_03064
H281DRAFT_03065: H281DRAFT_03065 - MFS transporter, DHA1 family, multidrug resistance protein, at 96,615 to 97,877
_03065
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1 at 94.421 kb on + strand, within H281DRAFT_03061 at 94.797 kb on + strand, within H281DRAFT_03062 at 94.846 kb on - strand, within H281DRAFT_03062 at 94.853 kb on + strand, within H281DRAFT_03062 at 94.853 kb on + strand, within H281DRAFT_03062 at 94.854 kb on - strand, within H281DRAFT_03062 at 94.872 kb on + strand, within H281DRAFT_03062 at 94.897 kb on - strand, within H281DRAFT_03062 at 94.931 kb on + strand, within H281DRAFT_03062 at 94.987 kb on - strand, within H281DRAFT_03062 at 94.987 kb on - strand, within H281DRAFT_03062 at 95.122 kb on - strand, within H281DRAFT_03062 at 95.235 kb on + strand at 95.236 kb on - strand at 95.319 kb on + strand at 95.319 kb on + strand at 95.481 kb on + strand, within H281DRAFT_03063 at 95.482 kb on - strand, within H281DRAFT_03063 at 95.628 kb on + strand, within H281DRAFT_03063 at 95.629 kb on - strand, within H281DRAFT_03063 at 95.667 kb on + strand, within H281DRAFT_03063 at 95.668 kb on - strand, within H281DRAFT_03063 at 95.732 kb on - strand, within H281DRAFT_03063 at 95.899 kb on - strand, within H281DRAFT_03063 at 96.461 kb on + strand, within H281DRAFT_03064 at 96.489 kb on + strand, within H281DRAFT_03064 at 96.489 kb on + strand, within H281DRAFT_03064 at 96.489 kb on + strand, within H281DRAFT_03064 at 96.490 kb on - strand at 97.058 kb on + strand, within H281DRAFT_03065 at 97.059 kb on - strand, within H281DRAFT_03065 at 97.059 kb on - strand, within H281DRAFT_03065
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 94,421 + H281DRAFT_03061 0.62 -0.1 94,797 + H281DRAFT_03062 0.13 -1.1 94,846 - H281DRAFT_03062 0.24 +0.4 94,853 + H281DRAFT_03062 0.25 +1.3 94,853 + H281DRAFT_03062 0.25 +0.4 94,854 - H281DRAFT_03062 0.26 +0.5 94,872 + H281DRAFT_03062 0.30 -0.1 94,897 - H281DRAFT_03062 0.35 -0.7 94,931 + H281DRAFT_03062 0.43 +1.0 94,987 - H281DRAFT_03062 0.55 +0.8 94,987 - H281DRAFT_03062 0.55 +0.2 95,122 - H281DRAFT_03062 0.85 +1.1 95,235 + +0.7 95,236 - -1.9 95,319 + +1.0 95,319 + +0.9 95,481 + H281DRAFT_03063 0.15 -2.7 95,482 - H281DRAFT_03063 0.16 +0.6 95,628 + H281DRAFT_03063 0.34 -0.8 95,629 - H281DRAFT_03063 0.34 +0.2 95,667 + H281DRAFT_03063 0.39 +0.2 95,668 - H281DRAFT_03063 0.39 -0.6 95,732 - H281DRAFT_03063 0.47 +0.3 95,899 - H281DRAFT_03063 0.68 -1.5 96,461 + H281DRAFT_03064 0.81 +0.3 96,489 + H281DRAFT_03064 0.89 -0.2 96,489 + H281DRAFT_03064 0.89 +0.4 96,489 + H281DRAFT_03064 0.89 +0.6 96,490 - -2.4 97,058 + H281DRAFT_03065 0.35 +0.2 97,059 - H281DRAFT_03065 0.35 -0.4 97,059 - H281DRAFT_03065 0.35 +0.5
Or see this region's nucleotide sequence