Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02899 and H281DRAFT_02900 are separated by 375 nucleotides
H281DRAFT_02899: H281DRAFT_02899 - DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains, at 502,926 to 504,377
_02899
H281DRAFT_02900: H281DRAFT_02900 - Small-conductance mechanosensitive channel, at 504,753 to 507,464
_02900
Position (kb) 502
503
504
505 Strain fitness (log2 ratio) -1
0
1 at 502.105 kb on + strand at 502.106 kb on - strand at 502.106 kb on - strand at 502.180 kb on + strand at 502.191 kb on + strand at 502.192 kb on - strand at 502.192 kb on - strand at 502.193 kb on + strand at 502.211 kb on - strand at 502.211 kb on - strand at 502.211 kb on - strand at 502.263 kb on + strand at 502.264 kb on - strand at 502.313 kb on - strand at 502.321 kb on + strand at 502.383 kb on + strand at 502.384 kb on - strand at 502.552 kb on + strand at 502.555 kb on - strand at 502.583 kb on + strand at 502.584 kb on - strand at 502.584 kb on - strand at 502.584 kb on - strand at 502.584 kb on - strand at 502.627 kb on + strand at 502.660 kb on - strand at 502.745 kb on + strand at 502.746 kb on - strand at 502.754 kb on - strand at 502.787 kb on + strand at 502.788 kb on - strand at 502.847 kb on + strand at 502.932 kb on - strand at 502.971 kb on + strand at 502.972 kb on - strand at 502.972 kb on - strand at 503.036 kb on - strand at 503.085 kb on - strand at 503.120 kb on + strand, within H281DRAFT_02899 at 503.120 kb on + strand, within H281DRAFT_02899 at 503.238 kb on + strand, within H281DRAFT_02899 at 503.387 kb on + strand, within H281DRAFT_02899 at 503.842 kb on - strand, within H281DRAFT_02899 at 503.935 kb on - strand, within H281DRAFT_02899 at 503.935 kb on - strand, within H281DRAFT_02899 at 504.001 kb on - strand, within H281DRAFT_02899 at 504.193 kb on - strand, within H281DRAFT_02899 at 504.241 kb on + strand at 504.241 kb on + strand at 504.242 kb on - strand at 504.350 kb on + strand at 504.356 kb on + strand at 504.356 kb on + strand at 504.531 kb on + strand at 504.531 kb on + strand at 504.532 kb on - strand at 504.532 kb on - strand at 504.532 kb on - strand at 504.532 kb on - strand at 504.548 kb on - strand at 504.629 kb on + strand at 504.630 kb on - strand at 504.745 kb on + strand at 504.753 kb on - strand at 504.763 kb on + strand at 504.767 kb on - strand at 504.767 kb on - strand at 504.767 kb on - strand at 505.294 kb on - strand, within H281DRAFT_02900 at 505.355 kb on - strand, within H281DRAFT_02900
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 502,105 + +0.0 502,106 - -0.7 502,106 - +1.6 502,180 + +0.2 502,191 + -1.7 502,192 - +0.4 502,192 - -0.3 502,193 + +0.7 502,211 - +0.5 502,211 - +0.8 502,211 - -0.8 502,263 + +0.6 502,264 - +0.9 502,313 - +0.6 502,321 + +0.1 502,383 + -0.8 502,384 - +0.1 502,552 + +0.3 502,555 - -1.1 502,583 + +0.3 502,584 - +1.4 502,584 - -0.4 502,584 - -1.7 502,584 - -0.3 502,627 + +1.3 502,660 - -0.2 502,745 + +0.2 502,746 - +0.6 502,754 - +0.0 502,787 + -0.8 502,788 - -0.3 502,847 + +1.2 502,932 - +0.6 502,971 + +0.3 502,972 - +0.5 502,972 - +0.1 503,036 - -0.8 503,085 - +1.2 503,120 + H281DRAFT_02899 0.13 +0.1 503,120 + H281DRAFT_02899 0.13 +0.7 503,238 + H281DRAFT_02899 0.21 +0.4 503,387 + H281DRAFT_02899 0.32 -0.6 503,842 - H281DRAFT_02899 0.63 -0.0 503,935 - H281DRAFT_02899 0.69 +0.0 503,935 - H281DRAFT_02899 0.69 +0.5 504,001 - H281DRAFT_02899 0.74 +0.4 504,193 - H281DRAFT_02899 0.87 -0.0 504,241 + +0.0 504,241 + -0.8 504,242 - +0.5 504,350 + +0.4 504,356 + +0.1 504,356 + -1.7 504,531 + -0.7 504,531 + -0.3 504,532 - -0.0 504,532 - +0.1 504,532 - -1.6 504,532 - -0.0 504,548 - -0.9 504,629 + +0.0 504,630 - +0.1 504,745 + +0.2 504,753 - -0.0 504,763 + -1.3 504,767 - +0.8 504,767 - -0.5 504,767 - +0.2 505,294 - H281DRAFT_02900 0.20 +0.6 505,355 - H281DRAFT_02900 0.22 -0.2
Or see this region's nucleotide sequence