Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02866 and H281DRAFT_02867 are separated by 14 nucleotides H281DRAFT_02867 and H281DRAFT_02868 overlap by 4 nucleotides
H281DRAFT_02866: H281DRAFT_02866 - precorrin-3 methyltransferase (EC 2.1.1.131), at 459,072 to 460,826
_02866
H281DRAFT_02867: H281DRAFT_02867 - DNA repair exonuclease SbcCD ATPase subunit, at 460,841 to 463,465
_02867
H281DRAFT_02868: H281DRAFT_02868 - DNA repair exonuclease SbcCD nuclease subunit, at 463,462 to 464,604
_02868
Position (kb) 460
461
462
463
464 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 459.967 kb on + strand, within H281DRAFT_02866 at 459.968 kb on - strand, within H281DRAFT_02866 at 460.037 kb on - strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.186 kb on - strand, within H281DRAFT_02866 at 460.186 kb on - strand, within H281DRAFT_02866 at 460.570 kb on - strand, within H281DRAFT_02866 at 460.570 kb on - strand, within H281DRAFT_02866 at 460.737 kb on - strand at 460.803 kb on + strand at 460.824 kb on + strand at 460.824 kb on + strand at 460.838 kb on + strand at 460.839 kb on - strand at 460.839 kb on - strand at 460.843 kb on - strand at 460.859 kb on - strand at 460.990 kb on + strand at 461.715 kb on - strand, within H281DRAFT_02867 at 462.126 kb on - strand, within H281DRAFT_02867 at 462.306 kb on - strand, within H281DRAFT_02867 at 462.493 kb on - strand, within H281DRAFT_02867 at 462.990 kb on + strand, within H281DRAFT_02867 at 462.991 kb on - strand, within H281DRAFT_02867 at 463.308 kb on + strand at 463.322 kb on + strand at 464.033 kb on + strand, within H281DRAFT_02868 at 464.034 kb on - strand, within H281DRAFT_02868 at 464.194 kb on - strand, within H281DRAFT_02868 at 464.194 kb on - strand, within H281DRAFT_02868
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 459,967 + H281DRAFT_02866 0.51 -3.6 459,968 - H281DRAFT_02866 0.51 -3.1 460,037 - H281DRAFT_02866 0.55 -4.1 460,185 + H281DRAFT_02866 0.63 -2.7 460,185 + H281DRAFT_02866 0.63 -3.2 460,185 + H281DRAFT_02866 0.63 -2.8 460,185 + H281DRAFT_02866 0.63 -4.2 460,186 - H281DRAFT_02866 0.63 -3.9 460,186 - H281DRAFT_02866 0.63 -5.0 460,570 - H281DRAFT_02866 0.85 -4.4 460,570 - H281DRAFT_02866 0.85 -3.1 460,737 - -2.6 460,803 + -3.0 460,824 + +0.6 460,824 + +0.5 460,838 + -1.3 460,839 - -0.2 460,839 - +0.6 460,843 - -0.5 460,859 - +0.1 460,990 + +0.6 461,715 - H281DRAFT_02867 0.33 +0.7 462,126 - H281DRAFT_02867 0.49 -1.0 462,306 - H281DRAFT_02867 0.56 -1.1 462,493 - H281DRAFT_02867 0.63 -0.4 462,990 + H281DRAFT_02867 0.82 -0.1 462,991 - H281DRAFT_02867 0.82 +0.6 463,308 + +0.8 463,322 + -1.2 464,033 + H281DRAFT_02868 0.50 -0.4 464,034 - H281DRAFT_02868 0.50 +0.0 464,194 - H281DRAFT_02868 0.64 -0.4 464,194 - H281DRAFT_02868 0.64 -0.2
Or see this region's nucleotide sequence