Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02661 and H281DRAFT_02662 are separated by 146 nucleotides H281DRAFT_02662 and H281DRAFT_02663 are separated by 71 nucleotides H281DRAFT_02663 and H281DRAFT_02664 overlap by 82 nucleotides H281DRAFT_02664 and H281DRAFT_02665 are separated by 15 nucleotides
H281DRAFT_02661: H281DRAFT_02661 - transcriptional regulator, AraC family with amidase-like domain, at 241,346 to 243,721
_02661
H281DRAFT_02662: H281DRAFT_02662 - Predicted xylanase/chitin deacetylase, at 243,868 to 244,770
_02662
H281DRAFT_02663: H281DRAFT_02663 - hypothetical protein, at 244,842 to 245,435
_02663
H281DRAFT_02664: H281DRAFT_02664 - hypothetical protein, at 245,354 to 245,521
_02664
H281DRAFT_02665: H281DRAFT_02665 - Outer membrane protein (porin), at 245,537 to 246,634
_02665
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1 at 242.911 kb on - strand, within H281DRAFT_02661 at 243.003 kb on - strand, within H281DRAFT_02661 at 243.414 kb on - strand, within H281DRAFT_02661 at 243.428 kb on + strand at 243.666 kb on + strand at 243.724 kb on + strand at 243.812 kb on - strand at 244.563 kb on - strand, within H281DRAFT_02662 at 244.634 kb on - strand, within H281DRAFT_02662 at 245.513 kb on + strand at 245.539 kb on - strand at 245.546 kb on - strand at 245.680 kb on - strand, within H281DRAFT_02665
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 242,911 - H281DRAFT_02661 0.66 +0.5 243,003 - H281DRAFT_02661 0.70 +0.4 243,414 - H281DRAFT_02661 0.87 +0.3 243,428 + -0.5 243,666 + -0.1 243,724 + +0.5 243,812 - -2.2 244,563 - H281DRAFT_02662 0.77 +1.2 244,634 - H281DRAFT_02662 0.85 +0.7 245,513 + +0.4 245,539 - -0.1 245,546 - +0.4 245,680 - H281DRAFT_02665 0.13 +0.8
Or see this region's nucleotide sequence