Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02597 and H281DRAFT_02598 overlap by 4 nucleotides H281DRAFT_02598 and H281DRAFT_02599 are separated by 2 nucleotides H281DRAFT_02599 and H281DRAFT_02600 are separated by 635 nucleotides
H281DRAFT_02597: H281DRAFT_02597 - Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family, at 171,864 to 172,655
_02597
H281DRAFT_02598: H281DRAFT_02598 - carboxylesterase, at 172,652 to 173,533
_02598
H281DRAFT_02599: H281DRAFT_02599 - hypothetical protein, at 173,536 to 174,210
_02599
H281DRAFT_02600: H281DRAFT_02600 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 174,846 to 175,448
_02600
Position (kb) 173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 172.617 kb on + strand at 172.709 kb on + strand at 172.821 kb on + strand, within H281DRAFT_02598 at 172.822 kb on - strand at 172.841 kb on - strand, within H281DRAFT_02598 at 173.094 kb on + strand, within H281DRAFT_02598 at 173.095 kb on - strand, within H281DRAFT_02598 at 173.360 kb on + strand, within H281DRAFT_02598 at 173.577 kb on + strand at 174.027 kb on + strand, within H281DRAFT_02599 at 174.038 kb on + strand, within H281DRAFT_02599 at 174.167 kb on + strand at 174.236 kb on - strand at 174.341 kb on - strand at 174.357 kb on + strand at 174.422 kb on + strand at 174.966 kb on + strand, within H281DRAFT_02600
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 172,617 + +0.0 172,709 + -0.6 172,821 + H281DRAFT_02598 0.19 -0.3 172,822 - +0.8 172,841 - H281DRAFT_02598 0.21 +0.1 173,094 + H281DRAFT_02598 0.50 -0.6 173,095 - H281DRAFT_02598 0.50 -1.1 173,360 + H281DRAFT_02598 0.80 -0.7 173,577 + -1.3 174,027 + H281DRAFT_02599 0.73 +0.4 174,038 + H281DRAFT_02599 0.74 +0.5 174,167 + +0.7 174,236 - -2.8 174,341 - -1.0 174,357 + +0.5 174,422 + +0.9 174,966 + H281DRAFT_02600 0.20 +0.5
Or see this region's nucleotide sequence