Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02596 and H281DRAFT_02597 are separated by 267 nucleotides H281DRAFT_02597 and H281DRAFT_02598 overlap by 4 nucleotides H281DRAFT_02598 and H281DRAFT_02599 are separated by 2 nucleotides
H281DRAFT_02596: H281DRAFT_02596 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 170,055 to 171,596
_02596
H281DRAFT_02597: H281DRAFT_02597 - Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family, at 171,864 to 172,655
_02597
H281DRAFT_02598: H281DRAFT_02598 - carboxylesterase, at 172,652 to 173,533
_02598
H281DRAFT_02599: H281DRAFT_02599 - hypothetical protein, at 173,536 to 174,210
_02599
Position (kb) 171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 171.418 kb on + strand, within H281DRAFT_02596 at 171.594 kb on + strand at 171.595 kb on - strand at 171.811 kb on + strand at 171.865 kb on + strand at 171.866 kb on - strand at 172.106 kb on + strand, within H281DRAFT_02597 at 172.106 kb on + strand, within H281DRAFT_02597 at 172.179 kb on + strand, within H281DRAFT_02597 at 172.180 kb on - strand, within H281DRAFT_02597 at 172.228 kb on + strand, within H281DRAFT_02597 at 172.381 kb on + strand, within H281DRAFT_02597 at 172.501 kb on + strand, within H281DRAFT_02597 at 172.513 kb on - strand, within H281DRAFT_02597 at 172.516 kb on + strand, within H281DRAFT_02597 at 172.516 kb on + strand, within H281DRAFT_02597 at 172.516 kb on + strand, within H281DRAFT_02597 at 172.516 kb on + strand, within H281DRAFT_02597 at 172.517 kb on - strand, within H281DRAFT_02597 at 172.517 kb on - strand, within H281DRAFT_02597 at 172.517 kb on - strand, within H281DRAFT_02597 at 172.617 kb on + strand at 172.709 kb on + strand at 172.821 kb on + strand, within H281DRAFT_02598 at 172.822 kb on - strand at 172.841 kb on - strand, within H281DRAFT_02598 at 173.094 kb on + strand, within H281DRAFT_02598 at 173.095 kb on - strand, within H281DRAFT_02598 at 173.360 kb on + strand, within H281DRAFT_02598 at 173.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 171,418 + H281DRAFT_02596 0.88 +0.6 171,594 + -0.3 171,595 - +0.1 171,811 + -0.3 171,865 + +0.6 171,866 - -0.3 172,106 + H281DRAFT_02597 0.31 -0.1 172,106 + H281DRAFT_02597 0.31 -3.4 172,179 + H281DRAFT_02597 0.40 -0.9 172,180 - H281DRAFT_02597 0.40 +0.4 172,228 + H281DRAFT_02597 0.46 +0.2 172,381 + H281DRAFT_02597 0.65 -0.3 172,501 + H281DRAFT_02597 0.80 +0.4 172,513 - H281DRAFT_02597 0.82 -2.7 172,516 + H281DRAFT_02597 0.82 +0.5 172,516 + H281DRAFT_02597 0.82 -0.5 172,516 + H281DRAFT_02597 0.82 -1.7 172,516 + H281DRAFT_02597 0.82 -0.4 172,517 - H281DRAFT_02597 0.82 +0.0 172,517 - H281DRAFT_02597 0.82 +0.3 172,517 - H281DRAFT_02597 0.82 +0.1 172,617 + +0.0 172,709 + -0.6 172,821 + H281DRAFT_02598 0.19 -0.3 172,822 - +0.8 172,841 - H281DRAFT_02598 0.21 +0.1 173,094 + H281DRAFT_02598 0.50 -0.6 173,095 - H281DRAFT_02598 0.50 -1.1 173,360 + H281DRAFT_02598 0.80 -0.7 173,577 + -1.3
Or see this region's nucleotide sequence