Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02568

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02567 and H281DRAFT_02568 are separated by 241 nucleotidesH281DRAFT_02568 and H281DRAFT_02569 are separated by 562 nucleotidesH281DRAFT_02569 and H281DRAFT_02570 are separated by 40 nucleotides H281DRAFT_02567: H281DRAFT_02567 - DNA-binding transcriptional regulator, LysR family, at 142,363 to 143,265 _02567 H281DRAFT_02568: H281DRAFT_02568 - Methyl-accepting chemotaxis protein, at 143,507 to 144,529 _02568 H281DRAFT_02569: H281DRAFT_02569 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 145,092 to 145,451 _02569 H281DRAFT_02570: H281DRAFT_02570 - transcriptional regulator, IclR family, at 145,492 to 146,298 _02570 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 142.859 kb on + strand, within H281DRAFT_02567at 143.326 kb on + strandat 143.409 kb on - strandat 143.571 kb on + strandat 143.572 kb on - strandat 143.966 kb on + strand, within H281DRAFT_02568at 143.966 kb on + strand, within H281DRAFT_02568at 144.420 kb on - strand, within H281DRAFT_02568at 144.450 kb on - strandat 144.450 kb on - strandat 144.494 kb on + strandat 144.666 kb on + strandat 144.667 kb on - strandat 144.667 kb on - strandat 144.790 kb on - strandat 144.825 kb on + strandat 144.832 kb on + strandat 144.854 kb on + strandat 145.223 kb on + strand, within H281DRAFT_02569at 145.294 kb on + strand, within H281DRAFT_02569at 145.295 kb on - strand, within H281DRAFT_02569

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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142,859 + H281DRAFT_02567 0.55 -0.8
143,326 + -0.4
143,409 - +0.7
143,571 + +0.4
143,572 - -0.0
143,966 + H281DRAFT_02568 0.45 -0.2
143,966 + H281DRAFT_02568 0.45 +1.7
144,420 - H281DRAFT_02568 0.89 +0.7
144,450 - -0.7
144,450 - -0.1
144,494 + -0.2
144,666 + +0.1
144,667 - +0.4
144,667 - +0.6
144,790 - -2.6
144,825 + +0.0
144,832 + -1.6
144,854 + +0.7
145,223 + H281DRAFT_02569 0.36 +0.0
145,294 + H281DRAFT_02569 0.56 +0.5
145,295 - H281DRAFT_02569 0.56 -0.5

Or see this region's nucleotide sequence