Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02334 and H281DRAFT_02335 are separated by 53 nucleotides H281DRAFT_02335 and H281DRAFT_02336 are separated by 37 nucleotides H281DRAFT_02336 and H281DRAFT_02337 are separated by 394 nucleotides
H281DRAFT_02334: H281DRAFT_02334 - DNA-binding transcriptional regulator, LysR family, at 491,854 to 492,831
_02334
H281DRAFT_02335: H281DRAFT_02335 - Uncharacterized conserved protein YaeQ, suppresses RfaH defect, at 492,885 to 493,529
_02335
H281DRAFT_02336: H281DRAFT_02336 - glyoxylase I family protein, at 493,567 to 493,992
_02336
H281DRAFT_02337: H281DRAFT_02337 - AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase, at 494,387 to 495,562
_02337
Position (kb) 493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 492.650 kb on - strand, within H281DRAFT_02334 at 492.659 kb on - strand, within H281DRAFT_02334 at 492.659 kb on - strand, within H281DRAFT_02334 at 492.659 kb on - strand, within H281DRAFT_02334 at 492.705 kb on + strand, within H281DRAFT_02334 at 492.705 kb on + strand, within H281DRAFT_02334 at 492.705 kb on + strand, within H281DRAFT_02334 at 492.706 kb on - strand, within H281DRAFT_02334 at 492.715 kb on - strand, within H281DRAFT_02334 at 492.797 kb on - strand at 492.847 kb on + strand at 492.847 kb on + strand at 492.847 kb on + strand at 492.847 kb on + strand at 492.847 kb on + strand at 492.847 kb on + strand at 492.848 kb on - strand at 492.848 kb on - strand at 492.848 kb on - strand at 492.888 kb on + strand at 492.889 kb on - strand at 492.965 kb on + strand, within H281DRAFT_02335 at 492.966 kb on - strand, within H281DRAFT_02335 at 492.996 kb on + strand, within H281DRAFT_02335 at 492.996 kb on + strand, within H281DRAFT_02335 at 492.996 kb on + strand, within H281DRAFT_02335 at 492.997 kb on - strand, within H281DRAFT_02335 at 493.036 kb on - strand, within H281DRAFT_02335 at 493.036 kb on - strand, within H281DRAFT_02335 at 493.039 kb on - strand, within H281DRAFT_02335 at 493.039 kb on - strand, within H281DRAFT_02335 at 493.293 kb on + strand, within H281DRAFT_02335 at 493.294 kb on - strand, within H281DRAFT_02335 at 493.441 kb on + strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.640 kb on + strand, within H281DRAFT_02336 at 493.640 kb on + strand, within H281DRAFT_02336 at 493.640 kb on + strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.642 kb on + strand, within H281DRAFT_02336 at 493.642 kb on + strand, within H281DRAFT_02336 at 493.643 kb on - strand, within H281DRAFT_02336 at 493.919 kb on + strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 494.017 kb on + strand at 494.017 kb on + strand at 494.018 kb on - strand at 494.042 kb on + strand at 494.043 kb on - strand at 494.095 kb on + strand at 494.095 kb on + strand at 494.096 kb on - strand at 494.096 kb on - strand at 494.169 kb on - strand at 494.171 kb on + strand at 494.172 kb on - strand at 494.172 kb on - strand at 494.174 kb on + strand at 494.175 kb on - strand at 494.176 kb on + strand at 494.177 kb on - strand at 494.177 kb on - strand at 494.276 kb on - strand at 494.276 kb on - strand at 494.328 kb on + strand at 494.328 kb on + strand at 494.329 kb on - strand at 494.329 kb on - strand at 494.329 kb on - strand at 494.348 kb on + strand at 494.348 kb on + strand at 494.349 kb on - strand at 494.349 kb on - strand at 494.417 kb on - strand at 494.510 kb on + strand, within H281DRAFT_02337 at 494.511 kb on - strand, within H281DRAFT_02337 at 494.814 kb on - strand, within H281DRAFT_02337 at 494.814 kb on - strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.961 kb on - strand, within H281DRAFT_02337 at 494.961 kb on - strand, within H281DRAFT_02337
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 492,650 - H281DRAFT_02334 0.81 +0.7 492,659 - H281DRAFT_02334 0.82 +0.2 492,659 - H281DRAFT_02334 0.82 +0.2 492,659 - H281DRAFT_02334 0.82 -1.5 492,705 + H281DRAFT_02334 0.87 +0.7 492,705 + H281DRAFT_02334 0.87 -1.1 492,705 + H281DRAFT_02334 0.87 +0.4 492,706 - H281DRAFT_02334 0.87 +0.2 492,715 - H281DRAFT_02334 0.88 +1.1 492,797 - +0.8 492,847 + -0.3 492,847 + +0.6 492,847 + -0.1 492,847 + -0.2 492,847 + +1.5 492,847 + +1.6 492,848 - +0.1 492,848 - -0.6 492,848 - -1.5 492,888 + -0.4 492,889 - +0.4 492,965 + H281DRAFT_02335 0.12 +0.9 492,966 - H281DRAFT_02335 0.13 +0.9 492,996 + H281DRAFT_02335 0.17 +0.0 492,996 + H281DRAFT_02335 0.17 -0.5 492,996 + H281DRAFT_02335 0.17 +0.8 492,997 - H281DRAFT_02335 0.17 -1.4 493,036 - H281DRAFT_02335 0.23 -0.3 493,036 - H281DRAFT_02335 0.23 +0.1 493,039 - H281DRAFT_02335 0.24 +0.7 493,039 - H281DRAFT_02335 0.24 -0.7 493,293 + H281DRAFT_02335 0.63 +0.2 493,294 - H281DRAFT_02335 0.63 +0.7 493,441 + H281DRAFT_02335 0.86 +0.5 493,442 - H281DRAFT_02335 0.86 -1.2 493,442 - H281DRAFT_02335 0.86 -1.6 493,442 - H281DRAFT_02335 0.86 +0.1 493,442 - H281DRAFT_02335 0.86 -2.4 493,640 + H281DRAFT_02336 0.17 +1.9 493,640 + H281DRAFT_02336 0.17 +1.2 493,640 + H281DRAFT_02336 0.17 +0.0 493,641 - H281DRAFT_02336 0.17 -0.6 493,641 - H281DRAFT_02336 0.17 -0.4 493,641 - H281DRAFT_02336 0.17 +0.1 493,641 - H281DRAFT_02336 0.17 -0.1 493,642 + H281DRAFT_02336 0.18 +0.7 493,642 + H281DRAFT_02336 0.18 -0.8 493,643 - H281DRAFT_02336 0.18 +0.7 493,919 + H281DRAFT_02336 0.83 +0.8 493,920 - H281DRAFT_02336 0.83 -0.4 493,920 - H281DRAFT_02336 0.83 -1.0 493,920 - H281DRAFT_02336 0.83 -1.0 493,920 - H281DRAFT_02336 0.83 -0.0 494,017 + +0.2 494,017 + +0.6 494,018 - -0.5 494,042 + +0.1 494,043 - +0.1 494,095 + +0.3 494,095 + -0.6 494,096 - +0.2 494,096 - -0.6 494,169 - -0.2 494,171 + +1.4 494,172 - +0.3 494,172 - +0.4 494,174 + -0.5 494,175 - -1.2 494,176 + +1.1 494,177 - -0.1 494,177 - +0.6 494,276 - -0.3 494,276 - -0.1 494,328 + +0.1 494,328 + +0.6 494,329 - +0.5 494,329 - -1.4 494,329 - +0.4 494,348 + -0.6 494,348 + -0.3 494,349 - +0.8 494,349 - -0.3 494,417 - +0.3 494,510 + H281DRAFT_02337 0.10 +0.5 494,511 - H281DRAFT_02337 0.11 -0.4 494,814 - H281DRAFT_02337 0.36 -0.0 494,814 - H281DRAFT_02337 0.36 -0.5 494,918 + H281DRAFT_02337 0.45 +0.1 494,918 + H281DRAFT_02337 0.45 -0.5 494,918 + H281DRAFT_02337 0.45 -0.0 494,961 - H281DRAFT_02337 0.49 +1.4 494,961 - H281DRAFT_02337 0.49 -1.6
Or see this region's nucleotide sequence