Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02281

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02279 and H281DRAFT_02280 are separated by 2 nucleotidesH281DRAFT_02280 and H281DRAFT_02281 are separated by 207 nucleotidesH281DRAFT_02281 and H281DRAFT_02282 are separated by 48 nucleotidesH281DRAFT_02282 and H281DRAFT_02283 are separated by 138 nucleotides H281DRAFT_02279: H281DRAFT_02279 - Protein of unknown function (DUF3987), at 424,817 to 426,265 _02279 H281DRAFT_02280: H281DRAFT_02280 - hypothetical protein, at 426,268 to 426,498 _02280 H281DRAFT_02281: H281DRAFT_02281 - hypothetical protein, at 426,706 to 427,509 _02281 H281DRAFT_02282: H281DRAFT_02282 - hypothetical protein, at 427,558 to 428,106 _02282 H281DRAFT_02283: H281DRAFT_02283 - hypothetical protein, at 428,245 to 428,460 _02283 Position (kb) 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 425.868 kb on + strand, within H281DRAFT_02279at 425.869 kb on - strand, within H281DRAFT_02279at 425.869 kb on - strand, within H281DRAFT_02279at 426.189 kb on + strandat 426.189 kb on + strandat 426.190 kb on - strandat 426.252 kb on + strandat 426.253 kb on - strandat 426.270 kb on - strandat 426.270 kb on - strandat 426.399 kb on - strand, within H281DRAFT_02280at 426.461 kb on + strand, within H281DRAFT_02280at 426.519 kb on - strandat 426.519 kb on - strandat 426.519 kb on - strandat 426.646 kb on + strandat 426.646 kb on + strandat 426.647 kb on - strandat 426.647 kb on - strandat 426.659 kb on + strandat 426.759 kb on + strandat 426.759 kb on + strandat 426.794 kb on + strand, within H281DRAFT_02281at 426.796 kb on + strand, within H281DRAFT_02281at 426.797 kb on - strand, within H281DRAFT_02281at 426.797 kb on - strand, within H281DRAFT_02281at 426.906 kb on + strand, within H281DRAFT_02281at 426.919 kb on + strand, within H281DRAFT_02281at 426.919 kb on + strand, within H281DRAFT_02281at 426.920 kb on - strand, within H281DRAFT_02281at 426.982 kb on + strand, within H281DRAFT_02281at 426.983 kb on - strand, within H281DRAFT_02281at 427.046 kb on - strand, within H281DRAFT_02281at 427.078 kb on + strand, within H281DRAFT_02281at 427.079 kb on - strand, within H281DRAFT_02281at 427.079 kb on - strand, within H281DRAFT_02281at 427.109 kb on + strand, within H281DRAFT_02281at 427.109 kb on + strand, within H281DRAFT_02281at 427.109 kb on + strand, within H281DRAFT_02281at 427.150 kb on + strand, within H281DRAFT_02281at 427.151 kb on - strand, within H281DRAFT_02281at 427.212 kb on + strand, within H281DRAFT_02281at 427.213 kb on - strand, within H281DRAFT_02281at 427.213 kb on - strand, within H281DRAFT_02281at 427.266 kb on - strand, within H281DRAFT_02281at 427.266 kb on - strand, within H281DRAFT_02281at 427.285 kb on + strand, within H281DRAFT_02281at 427.286 kb on - strand, within H281DRAFT_02281at 427.286 kb on - strand, within H281DRAFT_02281at 427.387 kb on + strandat 427.387 kb on + strand, within H281DRAFT_02281at 427.388 kb on - strand, within H281DRAFT_02281at 427.388 kb on - strand, within H281DRAFT_02281at 427.388 kb on - strand, within H281DRAFT_02281at 427.453 kb on + strandat 427.511 kb on + strandat 427.511 kb on + strandat 427.511 kb on + strandat 427.512 kb on - strandat 427.512 kb on - strandat 427.525 kb on - strandat 427.562 kb on - strandat 427.576 kb on + strandat 427.582 kb on + strandat 427.583 kb on - strandat 427.668 kb on + strand, within H281DRAFT_02282at 427.669 kb on - strand, within H281DRAFT_02282at 427.711 kb on + strand, within H281DRAFT_02282at 427.712 kb on - strand, within H281DRAFT_02282at 427.712 kb on - strand, within H281DRAFT_02282at 427.717 kb on + strand, within H281DRAFT_02282at 427.717 kb on + strand, within H281DRAFT_02282at 427.718 kb on - strandat 427.718 kb on - strand, within H281DRAFT_02282at 427.718 kb on - strand, within H281DRAFT_02282at 427.718 kb on - strand, within H281DRAFT_02282at 427.756 kb on + strand, within H281DRAFT_02282at 427.812 kb on - strand, within H281DRAFT_02282at 427.831 kb on + strand, within H281DRAFT_02282at 427.832 kb on - strand, within H281DRAFT_02282at 427.836 kb on + strand, within H281DRAFT_02282at 427.836 kb on + strand, within H281DRAFT_02282at 427.837 kb on - strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.865 kb on - strand, within H281DRAFT_02282at 427.865 kb on - strand, within H281DRAFT_02282at 427.866 kb on + strand, within H281DRAFT_02282at 427.866 kb on + strand, within H281DRAFT_02282at 428.108 kb on + strandat 428.109 kb on - strandat 428.109 kb on - strandat 428.152 kb on - strandat 428.186 kb on + strandat 428.203 kb on - strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.223 kb on - strandat 428.223 kb on - strandat 428.272 kb on + strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.436 kb on - strand, within H281DRAFT_02283at 428.466 kb on + strandat 428.474 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
425,868 + H281DRAFT_02279 0.73 +0.2
425,869 - H281DRAFT_02279 0.73 -0.9
425,869 - H281DRAFT_02279 0.73 +0.2
426,189 + -0.3
426,189 + -0.2
426,190 - -0.6
426,252 + -0.5
426,253 - -2.0
426,270 - -0.0
426,270 - -1.2
426,399 - H281DRAFT_02280 0.57 +0.5
426,461 + H281DRAFT_02280 0.84 +1.1
426,519 - -0.3
426,519 - -0.5
426,519 - -0.8
426,646 + +0.2
426,646 + -0.3
426,647 - -0.2
426,647 - -0.3
426,659 + +0.3
426,759 + -0.2
426,759 + +0.5
426,794 + H281DRAFT_02281 0.11 -0.8
426,796 + H281DRAFT_02281 0.11 +0.7
426,797 - H281DRAFT_02281 0.11 -0.7
426,797 - H281DRAFT_02281 0.11 -0.4
426,906 + H281DRAFT_02281 0.25 +3.1
426,919 + H281DRAFT_02281 0.26 -1.1
426,919 + H281DRAFT_02281 0.26 +0.3
426,920 - H281DRAFT_02281 0.27 -0.3
426,982 + H281DRAFT_02281 0.34 +0.1
426,983 - H281DRAFT_02281 0.34 +0.4
427,046 - H281DRAFT_02281 0.42 +0.2
427,078 + H281DRAFT_02281 0.46 +0.5
427,079 - H281DRAFT_02281 0.46 -1.0
427,079 - H281DRAFT_02281 0.46 +0.7
427,109 + H281DRAFT_02281 0.50 -0.3
427,109 + H281DRAFT_02281 0.50 +0.4
427,109 + H281DRAFT_02281 0.50 -0.0
427,150 + H281DRAFT_02281 0.55 +0.2
427,151 - H281DRAFT_02281 0.55 +1.0
427,212 + H281DRAFT_02281 0.63 -0.9
427,213 - H281DRAFT_02281 0.63 +0.2
427,213 - H281DRAFT_02281 0.63 +0.1
427,266 - H281DRAFT_02281 0.70 +0.3
427,266 - H281DRAFT_02281 0.70 +0.0
427,285 + H281DRAFT_02281 0.72 -0.2
427,286 - H281DRAFT_02281 0.72 +0.9
427,286 - H281DRAFT_02281 0.72 +2.0
427,387 + +2.7
427,387 + H281DRAFT_02281 0.85 +0.0
427,388 - H281DRAFT_02281 0.85 -1.4
427,388 - H281DRAFT_02281 0.85 +2.4
427,388 - H281DRAFT_02281 0.85 +0.2
427,453 + +0.2
427,511 + +0.0
427,511 + -0.1
427,511 + -0.2
427,512 - +0.7
427,512 - -0.3
427,525 - +0.5
427,562 - -2.9
427,576 + +0.6
427,582 + +0.9
427,583 - -0.0
427,668 + H281DRAFT_02282 0.20 +0.6
427,669 - H281DRAFT_02282 0.20 +0.8
427,711 + H281DRAFT_02282 0.28 -0.0
427,712 - H281DRAFT_02282 0.28 -0.1
427,712 - H281DRAFT_02282 0.28 -0.3
427,717 + H281DRAFT_02282 0.29 -0.7
427,717 + H281DRAFT_02282 0.29 +0.4
427,718 - +2.3
427,718 - H281DRAFT_02282 0.29 -0.2
427,718 - H281DRAFT_02282 0.29 +0.4
427,718 - H281DRAFT_02282 0.29 -0.5
427,756 + H281DRAFT_02282 0.36 +0.9
427,812 - H281DRAFT_02282 0.46 +0.7
427,831 + H281DRAFT_02282 0.50 +0.5
427,832 - H281DRAFT_02282 0.50 +0.3
427,836 + H281DRAFT_02282 0.51 -0.4
427,836 + H281DRAFT_02282 0.51 +0.4
427,837 - H281DRAFT_02282 0.51 -0.3
427,864 + H281DRAFT_02282 0.56 -0.7
427,864 + H281DRAFT_02282 0.56 -0.7
427,864 + H281DRAFT_02282 0.56 -0.5
427,864 + H281DRAFT_02282 0.56 -0.0
427,865 - H281DRAFT_02282 0.56 +0.1
427,865 - H281DRAFT_02282 0.56 +1.3
427,866 + H281DRAFT_02282 0.56 +0.3
427,866 + H281DRAFT_02282 0.56 +0.2
428,108 + +0.3
428,109 - -0.7
428,109 - +0.1
428,152 - +0.8
428,186 + -0.7
428,203 - -0.0
428,222 + -1.3
428,222 + -0.2
428,222 + -0.5
428,223 - +0.0
428,223 - -0.1
428,272 + H281DRAFT_02283 0.12 -1.4
428,417 - H281DRAFT_02283 0.80 -0.2
428,417 - H281DRAFT_02283 0.80 +0.5
428,435 + H281DRAFT_02283 0.88 -0.4
428,435 + H281DRAFT_02283 0.88 -0.7
428,436 - H281DRAFT_02283 0.88 -0.8
428,466 + -1.1
428,474 + +0.5

Or see this region's nucleotide sequence