Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02232 and H281DRAFT_02233 are separated by 380 nucleotides H281DRAFT_02233 and H281DRAFT_02234 are separated by 95 nucleotides H281DRAFT_02234 and H281DRAFT_02235 are separated by 0 nucleotides
H281DRAFT_02232: H281DRAFT_02232 - preQ(0) biosynthesis protein QueC, at 376,625 to 377,356
_02232
H281DRAFT_02233: H281DRAFT_02233 - tRNA_Phe_GAA, at 377,737 to 377,812
_02233
H281DRAFT_02234: H281DRAFT_02234 - two component transcriptional regulator, Fis family, at 377,908 to 378,600
_02234
H281DRAFT_02235: H281DRAFT_02235 - multi-sensor signal transduction histidine kinase, at 378,601 to 381,015
_02235
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 377.045 kb on - strand, within H281DRAFT_02232 at 377.173 kb on + strand, within H281DRAFT_02232 at 377.173 kb on + strand at 377.180 kb on + strand, within H281DRAFT_02232 at 377.235 kb on + strand, within H281DRAFT_02232 at 377.235 kb on + strand, within H281DRAFT_02232 at 377.236 kb on - strand, within H281DRAFT_02232 at 377.266 kb on - strand, within H281DRAFT_02232 at 377.460 kb on + strand at 377.460 kb on + strand at 377.461 kb on - strand at 377.461 kb on - strand at 377.461 kb on - strand at 377.462 kb on + strand at 377.463 kb on - strand at 377.499 kb on + strand at 377.499 kb on + strand at 377.500 kb on - strand at 377.500 kb on - strand at 377.500 kb on - strand at 377.500 kb on - strand at 377.501 kb on + strand at 377.502 kb on - strand at 377.614 kb on + strand at 377.653 kb on + strand at 377.653 kb on + strand at 377.654 kb on - strand at 377.656 kb on + strand at 377.657 kb on - strand at 377.657 kb on - strand at 378.649 kb on - strand at 379.133 kb on + strand, within H281DRAFT_02235 at 379.133 kb on + strand, within H281DRAFT_02235
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 377,045 - H281DRAFT_02232 0.57 -2.5 377,173 + H281DRAFT_02232 0.75 -1.3 377,173 + +1.3 377,180 + H281DRAFT_02232 0.76 -0.9 377,235 + H281DRAFT_02232 0.83 -0.3 377,235 + H281DRAFT_02232 0.83 -0.2 377,236 - H281DRAFT_02232 0.83 +0.2 377,266 - H281DRAFT_02232 0.88 +1.6 377,460 + -0.1 377,460 + -2.1 377,461 - +0.3 377,461 - -0.4 377,461 - -0.6 377,462 + -0.1 377,463 - +0.2 377,499 + -2.1 377,499 + +0.6 377,500 - +0.9 377,500 - +2.2 377,500 - -0.4 377,500 - +0.7 377,501 + -1.6 377,502 - +0.4 377,614 + +0.7 377,653 + -0.9 377,653 + -0.3 377,654 - +0.1 377,656 + -0.7 377,657 - -0.3 377,657 - +0.4 378,649 - -0.1 379,133 + H281DRAFT_02235 0.22 +1.6 379,133 + H281DRAFT_02235 0.22 -3.1
Or see this region's nucleotide sequence